Detailed information NTG0714220

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: NF398_RS05890
• Genome accession: NZ_CP102087
• Coordinates: 1214999..1215973 (-)
• Length: 324 a.a.
• NCBI ID: WP_023350200.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. capitis strain K1-2-2-23
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1209999..1220973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF398_RS05850	gcvT	1210532..1211623 (-)	1092	WP_023350205.1	glycine cleavage system aminomethyltransferase GcvT	-
NF398_RS05855	-	1211832..1212341 (-)	510	WP_029625706.1	shikimate kinase	-
NF398_RS05865	-	1212652..1212927 (-)	276	WP_260833079.1	hypothetical protein	-
NF398_RS05870	-	1212917..1213216 (-)	300	WP_023350203.1	hypothetical protein	-
NF398_RS05875	comGD	1213203..1213652 (-)	450	WP_023350202.1	competence type IV pilus minor pilin ComGD	-
NF398_RS05880	comGC	1213630..1213941 (-)	312	WP_029625707.1	competence type IV pilus major pilin ComGC	Machinery gene
NF398_RS05885	comGB	1213960..1215027 (-)	1068	WP_023350201.1	competence type IV pilus assembly protein ComGB	-
NF398_RS05890	comGA	1214999..1215973 (-)	975	WP_023350200.1	competence type IV pilus ATPase ComGA	Machinery gene
NF398_RS05895	-	1216031..1216654 (-)	624	WP_049399400.1	MBL fold metallo-hydrolase	-
NF398_RS05900	-	1216654..1216980 (-)	327	WP_002433945.1	MTH1187 family thiamine-binding protein	-
NF398_RS05905	-	1216980..1217966 (-)	987	WP_023350198.1	ROK family glucokinase	-
NF398_RS05910	-	1217963..1218166 (-)	204	WP_002433937.1	YqgQ family protein	-
NF398_RS05915	-	1218147..1219610 (-)	1464	WP_023350197.1	rhomboid family intramembrane serine protease	-
NF398_RS05920	-	1219611..1220162 (-)	552	WP_030063896.1	5-formyltetrahydrofolate cyclo-ligase	-
NF398_RS05925	rpmG	1220311..1220460 (-)	150	WP_002433802.1	50S ribosomal protein L33	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37044.84 Da
• Isoelectric Point: 7.7305

>NTDB_id=714220 NF398_RS05890 WP_023350200.1 1214999..1215973(-) (comGA) [Staphylococcus capitis subsp. capitis strain K1-2-2-23]
MKILFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT

Nucleotide

• Length: 975 bp

>NTDB_id=714220 NF398_RS05890 WP_023350200.1 1214999..1215973(-) (comGA) [Staphylococcus capitis subsp. capitis strain K1-2-2-23]
ATGAAAATATTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (8-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	70.898	99.691	0.707
comGA	Staphylococcus aureus N315	70.898	99.691	0.707