Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NF398_RS04445 Genome accession   NZ_CP102087
Coordinates   888595..889467 (+) Length   290 a.a.
NCBI ID   WP_023350397.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain K1-2-2-23     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 852852..925284 888595..889467 within 0


Gene organization within MGE regions


Location: 852852..925284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF398_RS04285 rsgA 853210..854085 (+) 876 WP_002435131.1 ribosome small subunit-dependent GTPase A -
  NF398_RS04290 rpe 854085..854729 (+) 645 WP_023350416.1 ribulose-phosphate 3-epimerase -
  NF398_RS04295 - 854736..855371 (+) 636 WP_023350415.1 thiamine diphosphokinase -
  NF398_RS04300 rpmB 855470..855658 (-) 189 WP_002435210.1 50S ribosomal protein L28 -
  NF398_RS04305 - 856025..856399 (+) 375 WP_002435187.1 Asp23/Gls24 family envelope stress response protein -
  NF398_RS04310 fakA 856414..858075 (+) 1662 WP_023350414.1 fatty acid kinase catalytic subunit FakA -
  NF398_RS04315 - 858301..859368 (+) 1068 WP_030065336.1 Glu/Leu/Phe/Val dehydrogenase -
  NF398_RS04320 - 859661..860266 (+) 606 Protein_837 thermonuclease family protein -
  NF398_RS04325 - 860246..860521 (+) 276 WP_226859644.1 excalibur calcium-binding domain-containing protein -
  NF398_RS04330 recG 860716..862764 (+) 2049 WP_002435185.1 ATP-dependent DNA helicase RecG -
  NF398_RS04335 fapR 863077..863646 (+) 570 WP_002435186.1 transcription factor FapR -
  NF398_RS04340 plsX 863639..864625 (+) 987 WP_002435190.1 phosphate acyltransferase PlsX -
  NF398_RS04345 fabD 864618..865544 (+) 927 WP_023350410.1 ACP S-malonyltransferase -
  NF398_RS04350 fabG 865537..866271 (+) 735 WP_002435264.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  NF398_RS04355 - 866991..867224 (+) 234 WP_001830184.1 acyl carrier protein -
  NF398_RS04360 rnc 867365..868078 (+) 714 WP_218926218.1 ribonuclease III -
  NF398_RS04365 smc 868205..871774 (+) 3570 WP_023350408.1 chromosome segregation protein SMC -
  NF398_RS04370 ftsY 871771..873030 (+) 1260 WP_023350407.1 signal recognition particle-docking protein FtsY -
  NF398_RS04375 - 873017..873349 (+) 333 WP_002435170.1 putative DNA-binding protein -
  NF398_RS04380 ffh 873379..874746 (+) 1368 WP_002435148.1 signal recognition particle protein -
  NF398_RS04385 rpsP 875174..875449 (+) 276 WP_002453071.1 30S ribosomal protein S16 -
  NF398_RS04390 rimM 875712..876215 (+) 504 WP_023350406.1 ribosome maturation factor RimM -
  NF398_RS04395 trmD 876215..876952 (+) 738 WP_023350405.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NF398_RS04400 rplS 877058..877408 (+) 351 WP_002436293.1 50S ribosomal protein L19 -
  NF398_RS04405 - 877985..878323 (-) 339 WP_023350404.1 hypothetical protein -
  NF398_RS04410 - 878363..878569 (-) 207 WP_226859621.1 hypothetical protein -
  NF398_RS04415 - 879049..881655 (-) 2607 WP_023350401.1 YfhO family protein -
  NF398_RS04420 - 881648..884248 (-) 2601 WP_023350400.1 YfhO family protein -
  NF398_RS04425 ylqF 884528..885411 (+) 884 Protein_858 ribosome biogenesis GTPase YlqF -
  NF398_RS04430 - 885395..886165 (+) 771 WP_023350398.1 ribonuclease HII -
  NF398_RS04435 sucC 886273..887439 (+) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  NF398_RS04440 sucD 887461..888369 (+) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  NF398_RS04445 dprA 888595..889467 (+) 873 WP_023350397.1 DNA-processing protein DprA Machinery gene
  NF398_RS04450 topA 889645..891720 (+) 2076 WP_030064789.1 type I DNA topoisomerase -
  NF398_RS04455 trmFO 891746..893053 (+) 1308 WP_023350395.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NF398_RS04460 xerC 893290..894180 (+) 891 WP_023350394.1 tyrosine recombinase XerC -
  NF398_RS04465 hslV 894184..894726 (+) 543 WP_023350393.1 ATP-dependent protease subunit HslV -
  NF398_RS04470 hslU 894810..896213 (+) 1404 WP_023350392.1 ATP-dependent protease ATPase subunit HslU -
  NF398_RS04475 codY 896236..897009 (+) 774 WP_002436324.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  NF398_RS04480 rpsB 897263..898051 (+) 789 WP_002436327.1 30S ribosomal protein S2 -
  NF398_RS04485 tsf 898202..899080 (+) 879 WP_030064793.1 translation elongation factor Ts -
  NF398_RS04490 pyrH 899217..899939 (+) 723 WP_002436299.1 UMP kinase -
  NF398_RS04495 frr 899956..900510 (+) 555 WP_002436295.1 ribosome recycling factor -
  NF398_RS04500 - 900791..901561 (+) 771 WP_023350390.1 isoprenyl transferase -
  NF398_RS04505 - 901565..902347 (+) 783 WP_002436308.1 phosphatidate cytidylyltransferase -
  NF398_RS04510 rseP 902587..903873 (+) 1287 WP_023350389.1 RIP metalloprotease RseP -
  NF398_RS04515 - 903893..905596 (+) 1704 WP_049326556.1 proline--tRNA ligase -
  NF398_RS04520 - 905852..910162 (+) 4311 WP_087671603.1 PolC-type DNA polymerase III -
  NF398_RS04525 rimP 910387..910854 (+) 468 WP_002436317.1 ribosome maturation factor RimP -
  NF398_RS04530 nusA 910875..912098 (+) 1224 WP_002436342.1 transcription termination factor NusA -
  NF398_RS04535 rnpM 912115..912399 (+) 285 WP_002436310.1 RNase P modulator RnpM -
  NF398_RS04540 - 912396..912713 (+) 318 WP_002436350.1 ribosomal L7Ae/L30e/S12e/Gadd45 family protein -
  NF398_RS04545 infB 912718..914892 (+) 2175 WP_023350386.1 translation initiation factor IF-2 -
  NF398_RS04550 rbfA 915049..915399 (+) 351 WP_002436301.1 30S ribosome-binding factor RbfA -
  NF398_RS04555 truB 915548..916465 (+) 918 WP_023350385.1 tRNA pseudouridine(55) synthase TruB -
  NF398_RS04560 ribF 916481..917452 (+) 972 WP_002436322.1 riboflavin biosynthesis protein RibF -
  NF398_RS04565 rpsO 917574..917843 (+) 270 WP_002436359.1 30S ribosomal protein S15 -
  NF398_RS04570 pnp 917977..920076 (+) 2100 WP_023350384.1 polyribonucleotide nucleotidyltransferase -
  NF398_RS04575 rnjB 920310..921983 (+) 1674 WP_002469869.1 ribonuclease J2 -
  NF398_RS12455 - 922241..923096 (+) 856 Protein_889 DNA translocase FtsK 4TM domain-containing protein -
  NF398_RS12460 - 923201..924661 (+) 1461 Protein_890 DNA translocase FtsK -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33411.79 Da        Isoelectric Point: 9.7513

>NTDB_id=714214 NF398_RS04445 WP_023350397.1 888595..889467(+) (dprA) [Staphylococcus capitis subsp. capitis strain K1-2-2-23]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNKMIEDWAKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIGSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNKLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYPPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDECSILSDYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=714214 NF398_RS04445 WP_023350397.1 888595..889467(+) (dprA) [Staphylococcus capitis subsp. capitis strain K1-2-2-23]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAACGCACTAATTCAAAATAAGATGATTGAGGATTGGGCTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGATAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGGCTCAAGAAAGTCAACCTTATATACAACTCAAGCTTTGGAAT
ATCTTTTCCCATCATTTAAATCACTAAAAATGACGATTATTTCAGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTCGCACTAAAAAATAAACTTCCAACAATAGGCGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCTTTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCCACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAATGTAGTATTCTTTCAGACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

59.028

99.31

0.586
  dprA Staphylococcus aureus MW2

59.028

99.31

0.586