Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LOY12_RS13430 Genome accession   NZ_CP116909
Coordinates   2711103..2712215 (-) Length   370 a.a.
NCBI ID   WP_016170584.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AATYW     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2706103..2717215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY12_RS13420 (LOY12_013420) gyrA 2706459..2709122 (-) 2664 WP_089430281.1 DNA gyrase subunit A -
  LOY12_RS13425 (LOY12_013425) gyrB 2709159..2711093 (-) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LOY12_RS13430 (LOY12_013430) recF 2711103..2712215 (-) 1113 WP_016170584.1 DNA replication/repair protein RecF Machinery gene
  LOY12_RS13435 (LOY12_013435) yaaA 2712212..2712457 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  LOY12_RS13440 (LOY12_013440) dnaN 2712838..2713971 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  LOY12_RS13445 (LOY12_013445) dnaA 2714249..2715610 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  LOY12_RS13450 (LOY12_013450) rpmH 2716341..2716478 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  LOY12_RS13455 (LOY12_013455) rnpA 2716599..2716952 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42383.37 Da        Isoelectric Point: 6.4362

>NTDB_id=714104 LOY12_RS13430 WP_016170584.1 2711103..2712215(-) (recF) [Staphylococcus aureus strain AATYW]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGVDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=714104 LOY12_RS13430 WP_016170584.1 2711103..2712215(-) (recF) [Staphylococcus aureus strain AATYW]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTAAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCGTGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.062

100

0.495