Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | K6J71_RS03280 | Genome accession | NZ_AP018783 |
| Coordinates | 652153..652566 (+) | Length | 137 a.a. |
| NCBI ID | WP_005649303.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain CHBN-V-3 isolate 15H03 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 647153..657566
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J71_RS03260 (CHBNV3_06220) | - | 647641..650235 (-) | 2595 | WP_005649307.1 | penicillin-binding protein 1A | - |
| K6J71_RS03265 (CHBNV3_06230) | comA | 650334..651131 (+) | 798 | WP_005649306.1 | pilus assembly protein PilM | Machinery gene |
| K6J71_RS03270 (CHBNV3_06240) | comB | 651132..651638 (+) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| K6J71_RS03275 (CHBNV3_06250) | comC | 651635..652156 (+) | 522 | WP_005649304.1 | competence protein ComC | Machinery gene |
| K6J71_RS03280 (CHBNV3_06260) | comD | 652153..652566 (+) | 414 | WP_005649303.1 | pilus assembly protein PilP | Machinery gene |
| K6J71_RS03285 (CHBNV3_06270) | comE | 652576..653913 (+) | 1338 | WP_005649302.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| K6J71_RS03290 (CHBNV3_06280) | - | 653926..654612 (+) | 687 | WP_005649301.1 | ComF family protein | - |
| K6J71_RS03295 (CHBNV3_06290) | nfuA | 654688..655284 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| K6J71_RS03300 (CHBNV3_06300) | nudC | 655351..656145 (+) | 795 | WP_005666520.1 | NAD(+) diphosphatase | - |
| K6J71_RS03305 (CHBNV3_06310) | - | 656181..656771 (+) | 591 | WP_005649296.1 | YjaG family protein | - |
| K6J71_RS03310 (CHBNV3_06320) | - | 656911..657183 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15700.86 Da Isoelectric Point: 4.7132
>NTDB_id=71388 K6J71_RS03280 WP_005649303.1 652153..652566(+) (comD) [Haemophilus influenzae strain CHBN-V-3 isolate 15H03]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADEHRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGIDVAQEGYIVEKINQNNVQFIRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADEHRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGIDVAQEGYIVEKINQNNVQFIRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=71388 K6J71_RS03280 WP_005649303.1 652153..652566(+) (comD) [Haemophilus influenzae strain CHBN-V-3 isolate 15H03]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAACATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCATTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATTCGTAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAACATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCATTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATTCGTAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
97.81 |
100 |
0.978 |
| comD | Haemophilus influenzae 86-028NP |
97.08 |
100 |
0.971 |