Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   NQD68_RS02220 Genome accession   NZ_CP101993
Coordinates   382272..383306 (+) Length   344 a.a.
NCBI ID   WP_000732713.1    Uniprot ID   A0AAV3JGP6
Organism   Streptococcus agalactiae strain BCJB3344     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 377272..388306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD68_RS02180 (NQD68_02185) tsaE 377348..377791 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NQD68_RS02185 (NQD68_02190) - 377784..378305 (+) 522 WP_000043145.1 GNAT family N-acetyltransferase -
  NQD68_RS02190 (NQD68_02195) - 378314..379621 (+) 1308 WP_000708156.1 LCP family protein -
  NQD68_RS02195 (NQD68_02200) - 379685..379981 (-) 297 WP_000690175.1 hypothetical protein -
  NQD68_RS02200 (NQD68_02205) - 379978..380397 (-) 420 WP_000368097.1 HIT family protein -
  NQD68_RS02205 (NQD68_02210) - 380733..381236 (+) 504 WP_000773453.1 hypothetical protein -
  NQD68_RS02210 (NQD68_02215) - 381288..381473 (-) 186 WP_000368100.1 hypothetical protein -
  NQD68_RS02215 (NQD68_02220) pptA 381545..382270 (+) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  NQD68_RS02220 (NQD68_02225) pptB 382272..383306 (+) 1035 WP_000732713.1 ABC transporter permease Regulator
  NQD68_RS02225 (NQD68_02230) ccrZ 383364..384164 (+) 801 WP_000155919.1 cell cycle regulator CcrZ -
  NQD68_RS02230 (NQD68_02235) trmB 384154..384789 (+) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NQD68_RS02240 (NQD68_02245) - 384967..386046 (-) 1080 WP_050150017.1 site-specific integrase -
  NQD68_RS02245 (NQD68_02250) - 386454..387527 (-) 1074 WP_017647292.1 hypothetical protein -
  NQD68_RS02250 (NQD68_02255) - 387540..387926 (-) 387 WP_000151181.1 ImmA/IrrE family metallo-endopeptidase -
  NQD68_RS02255 (NQD68_02260) - 387930..388277 (-) 348 WP_000484484.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40206.54 Da        Isoelectric Point: 10.4988

>NTDB_id=713848 NQD68_RS02220 WP_000732713.1 382272..383306(+) (pptB) [Streptococcus agalactiae strain BCJB3344]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDSILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=713848 NQD68_RS02220 WP_000732713.1 382272..383306(+) (pptB) [Streptococcus agalactiae strain BCJB3344]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAACGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAGTTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTAATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAAGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGGTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ACTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATAGCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)

Bacterial ABC transporter protein EcsB (EcsB)

(147-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.547

100

0.485
  pptB Streptococcus salivarius strain HSISS4

48.256

100

0.483