Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   PPM45_RS07930 Genome accession   NZ_CP116870
Coordinates   1518046..1519071 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513046..1524071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS07895 ylbE 1513346..1513585 (+) 240 WP_003232231.1 YlbE-like family protein -
  PPM45_RS07900 ylbF 1513701..1514150 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  PPM45_RS07905 ylbG 1514205..1514477 (+) 273 WP_009967171.1 YlbG family protein -
  PPM45_RS07910 rsmD 1514800..1515354 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PPM45_RS07915 coaD 1515359..1515844 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  PPM45_RS07920 spoVV 1515855..1517081 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  PPM45_RS07925 ylbK 1517262..1518044 (+) 783 WP_003232221.1 patatin family protein -
  PPM45_RS07930 sepM 1518046..1519071 (+) 1026 WP_003245451.1 protease DdcP Regulator
  PPM45_RS07935 tmcAL 1519088..1520335 (-) 1248 WP_003244707.1 nucleotidyltransferase -
  PPM45_RS07940 - 1520332..1520517 (-) 186 WP_003232215.1 hypothetical protein -
  PPM45_RS07945 ylbN 1520545..1521063 (+) 519 WP_003232214.1 YceD family protein -
  PPM45_RS07950 rpmF 1521085..1521264 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  PPM45_RS07955 gerR 1521410..1521991 (+) 582 WP_003232210.1 sporulation specific transcriptional regulator GerR -
  PPM45_RS07960 ylbP 1522048..1522530 (-) 483 WP_003244940.1 N-acetyltransferase -
  PPM45_RS07965 panEA 1522690..1523586 (+) 897 WP_003232206.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=713831 PPM45_RS07930 WP_003245451.1 1518046..1519071(+) (sepM) [Bacillus subtilis subsp. subtilis strain Master_strain]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=713831 PPM45_RS07930 WP_003245451.1 1518046..1519071(+) (sepM) [Bacillus subtilis subsp. subtilis strain Master_strain]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402