Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   PPM45_RS07900 Genome accession   NZ_CP116870
Coordinates   1513701..1514150 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508701..1519150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS07860 ctaE 1508718..1509341 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  PPM45_RS07865 ctaF 1509344..1509676 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  PPM45_RS07870 ctaG 1509703..1510596 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  PPM45_RS07875 ylbA 1510628..1510990 (-) 363 WP_003232238.1 YugN family protein -
  PPM45_RS07880 ylbB 1511130..1511576 (+) 447 WP_003221362.1 CBS domain-containing protein -
  PPM45_RS07885 ylbC 1511660..1512700 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  PPM45_RS07890 ylbD 1512932..1513330 (+) 399 WP_003232233.1 YlbD family protein -
  PPM45_RS07895 ylbE 1513346..1513585 (+) 240 WP_003232231.1 YlbE-like family protein -
  PPM45_RS07900 ylbF 1513701..1514150 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  PPM45_RS07905 ylbG 1514205..1514477 (+) 273 WP_009967171.1 YlbG family protein -
  PPM45_RS07910 rsmD 1514800..1515354 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PPM45_RS07915 coaD 1515359..1515844 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  PPM45_RS07920 spoVV 1515855..1517081 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  PPM45_RS07925 ylbK 1517262..1518044 (+) 783 WP_003232221.1 patatin family protein -
  PPM45_RS07930 sepM 1518046..1519071 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=713830 PPM45_RS07900 WP_003221370.1 1513701..1514150(+) (ylbF) [Bacillus subtilis subsp. subtilis strain Master_strain]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=713830 PPM45_RS07900 WP_003221370.1 1513701..1514150(+) (ylbF) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1