Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   NPS16_RS09020 Genome accession   NZ_CP101986
Coordinates   1899864..1900817 (-) Length   317 a.a.
NCBI ID   WP_019317550.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1894864..1905817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS16_RS08995 (NPS16_08995) proC 1895829..1896599 (+) 771 WP_002263447.1 pyrroline-5-carboxylate reductase -
  NPS16_RS09000 (NPS16_09000) - 1896684..1897346 (-) 663 WP_002263446.1 type II CAAX endopeptidase family protein -
  NPS16_RS09005 (NPS16_09005) - 1897399..1897839 (-) 441 WP_002263445.1 hypothetical protein -
  NPS16_RS09010 (NPS16_09010) - 1897808..1898053 (-) 246 WP_002263444.1 helix-turn-helix transcriptional regulator -
  NPS16_RS09015 (NPS16_09015) - 1898606..1899805 (-) 1200 WP_002265895.1 acetate kinase -
  NPS16_RS09020 (NPS16_09020) comYH 1899864..1900817 (-) 954 WP_019317550.1 class I SAM-dependent methyltransferase Machinery gene
  NPS16_RS09025 (NPS16_09025) comYG 1900872..1901261 (-) 390 WP_002263441.1 competence type IV pilus minor pilin ComGG Machinery gene
  NPS16_RS09030 (NPS16_09030) comYF 1901239..1901673 (-) 435 WP_002263440.1 competence type IV pilus minor pilin ComGF Machinery gene
  NPS16_RS09035 (NPS16_09035) comYE 1901660..1901953 (-) 294 WP_258968995.1 competence type IV pilus minor pilin ComGE Machinery gene
  NPS16_RS09040 (NPS16_09040) comYD 1901925..1902329 (-) 405 WP_168742475.1 competence type IV pilus minor pilin ComGD Machinery gene
  NPS16_RS09045 (NPS16_09045) comYC 1902316..1902630 (-) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  NPS16_RS09050 (NPS16_09050) comYB 1902630..1903661 (-) 1032 WP_258969313.1 competence type IV pilus assembly protein ComGB Machinery gene
  NPS16_RS09055 (NPS16_09055) comYA 1903597..1904538 (-) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  NPS16_RS09060 (NPS16_09060) - 1904669..1905052 (-) 384 WP_002263434.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36274.53 Da        Isoelectric Point: 5.2379

>NTDB_id=713676 NPS16_RS09020 WP_019317550.1 1899864..1900817(-) (comYH) [Streptococcus mutans strain COCC33-14]
MDFEKIEAAYNLLLDNCQRLETQLHTHLYDALIEQNACYLGAEGADDFIKENNKKLRQLNLSKEEWRRSFQFIFIKATQS
QQLQSNHQFTPDSIGFIILYLLEGLTNKSQLDIIEIGSGTGNLAETIVNNSSKSIDYMGIEVDDLLIDLSASIADVLDSS
VHFVQEDAVRPQILKESDVIISDLPVGFYPNDKIAQRYQVAAKLGHTYAHHLLMEQSLKYLKKEGLAIFLAPVDLLTSEQ
SPLLKKWLQNNVTILSVISLPEAIFKQKSNIKSIFVLKKQSQQSLESFVYPLTDLQDPEVLRRFMKNFKKWKEDNVF

Nucleotide


Download         Length: 954 bp        

>NTDB_id=713676 NPS16_RS09020 WP_019317550.1 1899864..1900817(-) (comYH) [Streptococcus mutans strain COCC33-14]
ATGGATTTTGAAAAAATAGAAGCTGCCTATAACTTACTGTTAGATAATTGTCAAAGGCTGGAAACTCAACTTCATACTCA
CCTTTATGATGCCTTAATTGAGCAAAATGCTTGCTATCTAGGTGCTGAAGGTGCTGATGATTTTATTAAAGAAAATAATA
AAAAACTGCGTCAGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTAGTTTTCAATTTATTTTTATTAAGGCTACTCAAAGT
CAGCAATTACAGTCAAATCACCAATTTACACCAGATAGTATTGGTTTTATTATTCTTTATTTATTGGAAGGTTTAACAAA
TAAGAGTCAGTTAGACATCATTGAAATTGGTTCTGGGACAGGAAATCTTGCAGAGACTATTGTGAATAACAGTTCAAAAA
GCATTGATTATATGGGGATTGAGGTTGACGATCTGTTAATTGATTTATCAGCAAGTATTGCCGATGTATTGGATTCTTCT
GTGCATTTTGTTCAAGAAGATGCAGTGCGGCCTCAGATTTTAAAAGAAAGTGATGTCATTATCAGTGATCTGCCAGTTGG
CTTTTATCCCAATGATAAAATTGCTCAGCGTTATCAGGTTGCAGCCAAGTTAGGACATACTTATGCACATCATCTTTTGA
TGGAGCAATCGCTTAAGTATTTAAAAAAAGAGGGACTTGCTATTTTTTTAGCGCCAGTGGATCTTTTAACTAGTGAGCAG
AGTCCTTTGCTTAAAAAGTGGTTACAGAACAATGTAACTATTTTATCCGTTATTTCTTTACCTGAGGCAATTTTTAAACA
GAAAAGTAATATAAAGTCAATCTTTGTCTTAAAGAAACAATCGCAACAAAGTTTGGAAAGTTTTGTCTATCCTTTGACAG
ATTTACAAGACCCCGAAGTTTTAAGACGATTTATGAAAAATTTTAAAAAGTGGAAGGAAGATAATGTCTTTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(77-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

99.369

100

0.994
  comYH Streptococcus mutans UA140

99.369

100

0.994