Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NP445_RS15080 Genome accession   NZ_CP101938
Coordinates   2877142..2877783 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BDGP7     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2872142..2882783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP445_RS15045 (NP445_15045) - 2873271..2873702 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  NP445_RS15050 (NP445_15050) - 2873702..2874043 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  NP445_RS15055 (NP445_15055) - 2874036..2875514 (+) 1479 WP_058336867.1 Na+/H+ antiporter subunit D -
  NP445_RS15060 (NP445_15060) - 2875521..2876000 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  NP445_RS15065 (NP445_15065) - 2876000..2876281 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  NP445_RS15070 (NP445_15070) mnhG 2876265..2876639 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  NP445_RS15075 (NP445_15075) - 2876729..2877118 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  NP445_RS15080 (NP445_15080) comA 2877142..2877783 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  NP445_RS15085 (NP445_15085) comP 2877864..2880155 (-) 2292 WP_144665880.1 ATP-binding protein Regulator
  NP445_RS15090 (NP445_15090) comX 2880162..2880350 (-) 189 WP_306160900.1 competence pheromone ComX -
  NP445_RS15095 (NP445_15095) - 2880319..2881242 (-) 924 WP_047945349.1 polyprenyl synthetase family protein -
  NP445_RS15100 (NP445_15100) degQ 2881394..2881534 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  NP445_RS15105 (NP445_15105) - 2882040..2882393 (+) 354 WP_017367963.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=713409 NP445_RS15080 WP_007500477.1 2877142..2877783(-) (comA) [Bacillus altitudinis strain BDGP7]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=713409 NP445_RS15080 WP_007500477.1 2877142..2877783(-) (comA) [Bacillus altitudinis strain BDGP7]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACGGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718