Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NP436_RS01965 Genome accession   NZ_CP101932
Coordinates   369177..369575 (-) Length   132 a.a.
NCBI ID   WP_014478800.1    Uniprot ID   A0A0D1L5A4
Organism   Bacillus subtilis subsp. natto strain BGSC 27E1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 364177..374575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP436_RS01930 (NP436_01930) - 364927..365124 (+) 198 WP_121509395.1 hypothetical protein -
  NP436_RS01935 (NP436_01935) yckC 365144..365599 (+) 456 WP_014478793.1 RDD family protein -
  NP436_RS01940 (NP436_01940) yckD 365681..366013 (+) 333 WP_014478794.1 YckD family protein -
  NP436_RS01945 (NP436_01945) - 366141..366563 (+) 423 WP_014478795.1 MarR family winged helix-turn-helix transcriptional regulator -
  NP436_RS01950 (NP436_01950) - 366551..366871 (+) 321 WP_014478796.1 DUF3147 family protein -
  NP436_RS01955 (NP436_01955) - 366890..367634 (+) 745 Protein_341 AAA family ATPase -
  NP436_RS01960 (NP436_01960) bglC 367707..369140 (+) 1434 WP_014478799.1 6-phospho-beta-glucosidase -
  NP436_RS01965 (NP436_01965) nin/comJ 369177..369575 (-) 399 WP_014478800.1 DNA-entry nuclease inhibitor Regulator
  NP436_RS01970 (NP436_01970) nucA/comI 369602..370051 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  NP436_RS01975 (NP436_01975) tlpC 370219..371940 (-) 1722 Protein_345 methyl-accepting chemotaxis protein TlpC -
  NP436_RS01980 (NP436_01980) hxlB 372051..372608 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  NP436_RS01985 (NP436_01985) hxlA 372614..373246 (-) 633 WP_014478804.1 3-hexulose-6-phosphate synthase -
  NP436_RS01990 (NP436_01990) hxlR 373475..373837 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15006.98 Da        Isoelectric Point: 4.8991

>NTDB_id=713127 NP436_RS01965 WP_014478800.1 369177..369575(-) (nin/comJ) [Bacillus subtilis subsp. natto strain BGSC 27E1]
MIKSWKPQELSISYHQFTVFQKDSTPPIMDWTDEAIEKGYTAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=713127 NP436_RS01965 WP_014478800.1 369177..369575(-) (nin/comJ) [Bacillus subtilis subsp. natto strain BGSC 27E1]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TATAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATACTGCGGCAGACGGAGCCATTTCATTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATTATGTCTAAGAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L5A4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

97.727

100

0.977