Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NP432_RS12270 Genome accession   NZ_CP101931
Coordinates   2420523..2420858 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain BGSC b98af     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2415523..2425858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP432_RS12250 (NP432_12250) gcvT 2416115..2417203 (-) 1089 WP_129092523.1 glycine cleavage system aminomethyltransferase GcvT -
  NP432_RS12255 (NP432_12255) hepAA 2417645..2419318 (+) 1674 WP_085186487.1 DEAD/DEAH box helicase -
  NP432_RS12260 (NP432_12260) yqhG 2419339..2420133 (+) 795 WP_003230200.1 YqhG family protein -
  NP432_RS12265 (NP432_12265) sinI 2420316..2420489 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  NP432_RS12270 (NP432_12270) sinR 2420523..2420858 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NP432_RS12275 (NP432_12275) tasA 2420951..2421736 (-) 786 WP_212130175.1 biofilm matrix protein TasA -
  NP432_RS12280 (NP432_12280) sipW 2421800..2422372 (-) 573 WP_003246088.1 signal peptidase I SipW -
  NP432_RS12285 (NP432_12285) tapA 2422356..2423117 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  NP432_RS12290 (NP432_12290) yqzG 2423389..2423715 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NP432_RS12295 (NP432_12295) spoIITA 2423757..2423936 (-) 180 WP_029726723.1 YqzE family protein -
  NP432_RS12300 (NP432_12300) comGG 2424008..2424382 (-) 375 WP_167408283.1 ComG operon protein ComGG Machinery gene
  NP432_RS12305 (NP432_12305) comGF 2424383..2424766 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  NP432_RS12310 (NP432_12310) comGE 2424792..2425139 (-) 348 WP_021480020.1 ComG operon protein 5 Machinery gene
  NP432_RS12315 (NP432_12315) comGD 2425123..2425554 (-) 432 WP_256682874.1 comG operon protein ComGD Machinery gene
  NP432_RS12320 (NP432_12320) comGC 2425544..2425840 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=713083 NP432_RS12270 WP_003226345.1 2420523..2420858(+) (sinR) [Bacillus subtilis strain BGSC b98af]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=713083 NP432_RS12270 WP_003226345.1 2420523..2420858(+) (sinR) [Bacillus subtilis strain BGSC b98af]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1