Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   PNF29_RS19020 Genome accession   NZ_CP116773
Coordinates   3584691..3585125 (-) Length   144 a.a.
NCBI ID   WP_103330339.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM125727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3579691..3590125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS19005 (PNF29_19005) epsK 3580320..3581171 (-) 852 Protein_3736 cyclic-di-GMP receptor EpsK -
  PNF29_RS19010 (PNF29_19010) ephJ 3581152..3582240 (-) 1089 WP_272515731.1 lipoprotein YdaJ -
  PNF29_RS19015 (PNF29_19015) topB 3582443..3584626 (-) 2184 WP_272515732.1 DNA topoisomerase III -
  PNF29_RS19020 (PNF29_19020) lrpC 3584691..3585125 (-) 435 WP_103330339.1 transcriptional regulator LrpC Machinery gene
  PNF29_RS19025 (PNF29_19025) ydzA 3585310..3585600 (+) 291 WP_014478869.1 DUF3817 domain-containing protein -
  PNF29_RS19030 (PNF29_19030) amj 3585645..3586454 (-) 810 WP_272515733.1 lipid II flippase Amj -
  PNF29_RS19035 (PNF29_19035) ydaG 3586959..3587381 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  PNF29_RS19040 (PNF29_19040) ydaF 3587459..3588010 (-) 552 WP_272515734.1 GNAT family N-acetyltransferase -
  PNF29_RS19045 (PNF29_19045) lyxE 3588099..3588602 (-) 504 WP_272515735.1 D-lyxose ketol-isomerase -
  PNF29_RS19050 (PNF29_19050) ydaD 3588618..3589478 (-) 861 WP_017697338.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16484.04 Da        Isoelectric Point: 7.7037

>NTDB_id=713081 PNF29_RS19020 WP_103330339.1 3584691..3585125(-) (lrpC) [Bacillus subtilis strain SRCM125727]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTFPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=713081 PNF29_RS19020 WP_103330339.1 3584691..3585125(-) (lrpC) [Bacillus subtilis strain SRCM125727]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTTCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

99.306

100

0.993