Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   PNF29_RS13060 Genome accession   NZ_CP116773
Coordinates   2461002..2462027 (-) Length   341 a.a.
NCBI ID   WP_014476730.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM125727     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2456002..2467027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS13025 (PNF29_13025) panEA 2456487..2457383 (-) 897 WP_017694819.1 2-dehydropantoate 2-reductase -
  PNF29_RS13030 (PNF29_13030) ylbP 2457543..2458025 (+) 483 WP_014476736.1 N-acetyltransferase -
  PNF29_RS13035 (PNF29_13035) gerR 2458082..2458663 (-) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  PNF29_RS13040 (PNF29_13040) rpmF 2458809..2458988 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  PNF29_RS13045 (PNF29_13045) ylbN 2459010..2459528 (-) 519 WP_014479718.1 YceD family protein -
  PNF29_RS13050 (PNF29_13050) - 2459556..2459741 (+) 186 WP_003232215.1 hypothetical protein -
  PNF29_RS13055 (PNF29_13055) tmcAL 2459738..2460985 (+) 1248 WP_003244707.1 nucleotidyltransferase -
  PNF29_RS13060 (PNF29_13060) sepM 2461002..2462027 (-) 1026 WP_014476730.1 protease DdcP Regulator
  PNF29_RS13065 (PNF29_13065) ylbK 2462029..2462811 (-) 783 WP_017694818.1 patatin family protein -
  PNF29_RS13070 (PNF29_13070) spoVV 2462992..2464218 (+) 1227 WP_017694817.1 dipicolinic acid transporter SpoVV -
  PNF29_RS13075 (PNF29_13075) coaD 2464229..2464714 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  PNF29_RS13080 (PNF29_13080) rsmD 2464719..2465273 (-) 555 WP_017694816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PNF29_RS13085 (PNF29_13085) ylbG 2465596..2465868 (-) 273 WP_009967171.1 YlbG family protein -
  PNF29_RS13090 (PNF29_13090) ylbF 2465923..2466372 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  PNF29_RS13095 (PNF29_13095) ylbE 2466488..2466727 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37652.22 Da        Isoelectric Point: 5.9932

>NTDB_id=713039 PNF29_RS13060 WP_014476730.1 2461002..2462027(-) (sepM) [Bacillus subtilis strain SRCM125727]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSDMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=713039 PNF29_RS13060 WP_014476730.1 2461002..2462027(-) (sepM) [Bacillus subtilis strain SRCM125727]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGTTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAGATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCAATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402