Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PNF29_RS11680 Genome accession   NZ_CP116773
Coordinates   2191702..2192319 (+) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis strain SRCM125727     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2186702..2197319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS11645 (PNF29_11645) ynzD 2186943..2187116 (+) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  PNF29_RS11650 (PNF29_11650) yneF 2187190..2187408 (-) 219 WP_003221221.1 YneF family protein -
  PNF29_RS11655 (PNF29_11655) sirA 2187494..2187940 (-) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  PNF29_RS11660 (PNF29_11660) recP/tkt 2188093..2190096 (-) 2004 WP_003231593.1 transketolase Machinery gene
  PNF29_RS11665 (PNF29_11665) ynzC 2190265..2190498 (-) 234 WP_003231595.1 DUF896 domain-containing protein -
  PNF29_RS11670 (PNF29_11670) dinL 2190562..2191215 (-) 654 WP_017697355.1 YneB family resolvase-like protein -
  PNF29_RS11675 (PNF29_11675) yneA 2191234..2191551 (-) 318 WP_003231598.1 cell division suppressor protein YneA -
  PNF29_RS11680 (PNF29_11680) dinR/lexA 2191702..2192319 (+) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  PNF29_RS11685 (PNF29_11685) - 2192691..2192948 (-) 258 WP_371150539.1 hypothetical protein -
  PNF29_RS11690 (PNF29_11690) fosM 2192857..2193291 (-) 435 WP_024573196.1 FosM family fosfomycin resistance protein -
  PNF29_RS11695 (PNF29_11695) - 2193499..2193948 (+) 450 WP_003245454.1 YndM family protein -
  PNF29_RS11700 (PNF29_11700) pghL 2193975..2194733 (-) 759 WP_144453966.1 gamma-polyglutamate hydrolase PghL -
  PNF29_RS11705 (PNF29_11705) - 2194958..2195272 (-) 315 WP_003245621.1 hypothetical protein -
  PNF29_RS11710 (PNF29_11710) yndJ 2195360..2197000 (-) 1641 WP_144453968.1 YndJ family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=713025 PNF29_RS11680 WP_003238209.1 2191702..2192319(+) (dinR/lexA) [Bacillus subtilis strain SRCM125727]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=713025 PNF29_RS11680 WP_003238209.1 2191702..2192319(+) (dinR/lexA) [Bacillus subtilis strain SRCM125727]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGGGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCAGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1