Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   PNF29_RS11660 Genome accession   NZ_CP116773
Coordinates   2188093..2190096 (-) Length   667 a.a.
NCBI ID   WP_003231593.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM125727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2183093..2195096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS11620 (PNF29_11620) yneK 2183246..2183674 (+) 429 WP_017696519.1 DynA interaction protein YneK -
  PNF29_RS11630 (PNF29_11630) yneJ 2184995..2185486 (-) 492 WP_010886519.1 CcdC family protein -
  PNF29_RS11635 (PNF29_11635) yneI 2185565..2185927 (-) 363 WP_003245707.1 response regulator -
  PNF29_RS11640 (PNF29_11640) ccdA 2186016..2186723 (-) 708 WP_017697354.1 cytochrome c-type biogenesis protein CcdA -
  PNF29_RS11645 (PNF29_11645) ynzD 2186943..2187116 (+) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  PNF29_RS11650 (PNF29_11650) yneF 2187190..2187408 (-) 219 WP_003221221.1 YneF family protein -
  PNF29_RS11655 (PNF29_11655) sirA 2187494..2187940 (-) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  PNF29_RS11660 (PNF29_11660) recP/tkt 2188093..2190096 (-) 2004 WP_003231593.1 transketolase Machinery gene
  PNF29_RS11665 (PNF29_11665) ynzC 2190265..2190498 (-) 234 WP_003231595.1 DUF896 domain-containing protein -
  PNF29_RS11670 (PNF29_11670) dinL 2190562..2191215 (-) 654 WP_017697355.1 YneB family resolvase-like protein -
  PNF29_RS11675 (PNF29_11675) yneA 2191234..2191551 (-) 318 WP_003231598.1 cell division suppressor protein YneA -
  PNF29_RS11680 (PNF29_11680) dinR/lexA 2191702..2192319 (+) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  PNF29_RS11685 (PNF29_11685) - 2192691..2192948 (-) 258 WP_371150539.1 hypothetical protein -
  PNF29_RS11690 (PNF29_11690) fosM 2192857..2193291 (-) 435 WP_024573196.1 FosM family fosfomycin resistance protein -
  PNF29_RS11695 (PNF29_11695) - 2193499..2193948 (+) 450 WP_003245454.1 YndM family protein -
  PNF29_RS11700 (PNF29_11700) pghL 2193975..2194733 (-) 759 WP_144453966.1 gamma-polyglutamate hydrolase PghL -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 72316.39 Da        Isoelectric Point: 4.7291

>NTDB_id=713024 PNF29_RS11660 WP_003231593.1 2188093..2190096(-) (recP/tkt) [Bacillus subtilis strain SRCM125727]
MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVSPANPGWFNRDRFVLSAGHGSALLYSMLHLSG
FDLSIEDLKGFRQWGSKTPGHPEFGHTAGVDATTGPLGQGIAMAVGMAIAERHLAETYNRDSFNVVDHYTYSICGDGDLM
EGISSEAASLAGHLQLGRLIVLYDSNDISLDGDLDRSFSENVKQRFEAMNWEVLYVEDGNNIEELTAAIEKARQNEKKPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGKEESKLTKEAYAWTYEEDFYVPSEVYEHFAAAVKESGEKKEQEWNAQFAKYKE
VYPELAEQLELAIKGELPKDWDQEVPVYEKGSSLASRASSGEVLNGLAKKIPFFVGGSADLAGSNKTTIKNAGDFTAVDY
SGKNFWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPVEQLA
SLRAMPNLSLIRPADGNETAAAWKLAVQSTDHPTALVLTRQNLPTIDQTSEEALAGVEKGAYVVSKSKNETPDALLIASG
SEVGLAIEAQAELAKENIDVSVVSMPSMDRFEKQSDEYKNEVLPADVKKRLAIEMGSSFGWGKYTGLEGDVLGIDRFGAS
APGETIINEYGFSVPNVVNRVKALINK

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=713024 PNF29_RS11660 WP_003231593.1 2188093..2190096(-) (recP/tkt) [Bacillus subtilis strain SRCM125727]
ATGGATACAATTGAAAAGAAATCAGTTGCTACCATTCGCACACTGTCAATAGACGCTATTGAAAAAGCAAATTCTGGTCA
CCCAGGGATGCCGATGGGAGCCGCTCCAATGGCATACACGCTGTGGACAAAATTTATGAACGTAAGTCCGGCAAACCCTG
GCTGGTTTAACCGTGACCGTTTTGTTTTATCTGCTGGACACGGGTCAGCACTATTATACAGCATGCTTCATTTAAGCGGG
TTTGATCTTAGTATTGAAGATCTTAAGGGATTCCGCCAGTGGGGCAGCAAAACACCAGGACATCCGGAATTCGGACATAC
TGCCGGTGTTGATGCTACAACAGGTCCGCTTGGCCAAGGAATTGCCATGGCAGTCGGTATGGCAATTGCTGAACGCCATT
TAGCGGAAACATACAACCGCGATTCATTTAACGTAGTCGATCATTATACATACAGTATTTGCGGTGATGGTGATTTAATG
GAAGGTATTTCTTCTGAAGCCGCTTCACTCGCAGGCCATCTTCAGCTTGGCCGTCTGATCGTACTATACGATTCTAATGA
CATCTCTCTTGATGGAGACCTCGACCGTTCATTCTCTGAAAACGTGAAACAGCGTTTTGAAGCAATGAATTGGGAAGTTC
TTTATGTTGAGGATGGAAACAATATTGAAGAATTAACAGCGGCTATCGAAAAAGCACGCCAAAATGAAAAGAAACCTACA
TTAATTGAAGTGAAAACGACAATCGGATTCGGTTCACCTAACCGTGCCGGTACATCCGGTGTTCACGGTGCGCCGCTTGG
TAAAGAAGAAAGCAAATTAACAAAAGAAGCTTACGCGTGGACATATGAAGAAGACTTCTACGTTCCGTCAGAAGTTTATG
AGCATTTCGCTGCAGCTGTTAAAGAATCAGGTGAGAAAAAAGAACAAGAATGGAATGCTCAATTCGCTAAATATAAAGAA
GTTTATCCTGAACTTGCTGAACAGCTTGAACTGGCAATCAAAGGAGAGCTTCCGAAGGACTGGGATCAAGAGGTTCCTGT
GTATGAAAAAGGAAGCAGTTTGGCATCCCGTGCATCTTCCGGTGAAGTTCTCAACGGACTTGCGAAAAAAATTCCTTTCT
TTGTCGGAGGTTCTGCTGACCTAGCGGGATCGAACAAAACGACTATTAAAAATGCCGGTGATTTTACAGCGGTTGATTAC
TCAGGCAAAAACTTCTGGTTTGGTGTACGTGAATTTGCGATGGGTGCGGCCTTAAACGGTATGGCGCTTCATGGCGGTCT
TCGTGTATTCGGCGGAACTTTCTTTGTCTTCTCTGATTACCTGCGTCCTGCGATTCGCCTTGCAGCGTTAATGGGCCTTC
CTGTGACATATGTCTTCACACATGACAGTATTGCGGTTGGTGAAGACGGTCCGACGCACGAGCCTGTTGAACAGCTTGCT
TCACTCCGTGCGATGCCTAACCTTTCTTTGATCCGTCCAGCAGACGGCAATGAGACAGCAGCAGCATGGAAGCTTGCAGT
GCAAAGCACTGACCACCCAACAGCGCTAGTGCTTACACGTCAAAACCTTCCTACCATCGATCAAACATCTGAAGAAGCAT
TGGCAGGAGTAGAAAAAGGTGCATATGTCGTTTCTAAATCTAAAAACGAAACACCTGACGCTCTTCTCATCGCTTCCGGA
TCAGAGGTAGGTCTTGCAATTGAAGCGCAGGCTGAATTGGCAAAAGAAAATATCGATGTTTCTGTTGTCAGCATGCCTTC
AATGGACCGTTTTGAGAAACAATCTGATGAATACAAAAACGAAGTCCTTCCTGCAGATGTGAAAAAACGTCTTGCAATTG
AAATGGGCTCATCATTTGGATGGGGCAAATACACGGGGCTTGAAGGTGACGTTCTCGGCATAGACCGATTCGGTGCATCT
GCTCCTGGTGAAACCATCATTAACGAATACGGCTTCTCAGTTCCGAACGTAGTGAATCGAGTTAAGGCATTAATCAATAA
GTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(548-657)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.647

99.25

0.562