Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PNF29_RS00355 Genome accession   NZ_CP116773
Coordinates   61067..61861 (+) Length   264 a.a.
NCBI ID   WP_144453088.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM125727     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 56067..66861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS00335 (PNF29_00335) walR 56309..57016 (+) 708 WP_069837943.1 cell wall metabolism DNA-binding response regulator WalR -
  PNF29_RS00340 (PNF29_00340) walK 57024..58859 (+) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  PNF29_RS00345 (PNF29_00345) walH 58849..60216 (+) 1368 WP_041054960.1 WalRK two-component regulatory system regulator WalH -
  PNF29_RS00350 (PNF29_00350) walI 60203..61045 (+) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  PNF29_RS00355 (PNF29_00355) vicX 61067..61861 (+) 795 WP_144453088.1 MBL fold metallo-hydrolase Regulator
  PNF29_RS00360 (PNF29_00360) htrA 61943..63145 (+) 1203 WP_272515834.1 serine protease HtrC Regulator
  PNF29_RS00365 (PNF29_00365) - 63165..63295 (+) 131 Protein_70 hypothetical protein -
  PNF29_RS00370 (PNF29_00370) - 63323..63475 (+) 153 Protein_71 ATP-binding protein -
  PNF29_RS00375 (PNF29_00375) rocR 63457..64842 (-) 1386 WP_017695782.1 arginine utilization regulatory protein RocR -
  PNF29_RS00380 (PNF29_00380) rocD 65080..66285 (+) 1206 WP_272515836.1 ornithine aminotransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29284.26 Da        Isoelectric Point: 5.5597

>NTDB_id=712959 PNF29_RS00355 WP_144453088.1 61067..61861(+) (vicX) [Bacillus subtilis strain SRCM125727]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMEDQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=712959 PNF29_RS00355 WP_144453088.1 61067..61861(+) (vicX) [Bacillus subtilis strain SRCM125727]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTAATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGGATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAATCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTTTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGGTATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTTGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATATGACACCGATCCGAAGAAGGCCACTCCGCTTTGTGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53