Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   PND17_RS04615 Genome accession   NZ_CP116772
Coordinates   863879..864196 (+) Length   105 a.a.
NCBI ID   WP_002952035.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 858879..869196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS04580 (PND17_04580) - 860138..860500 (+) 363 WP_087010198.1 DUF1033 family protein -
  PND17_RS04585 (PND17_04585) comGA/cglA/cilD 860581..861522 (+) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  PND17_RS04590 (PND17_04590) comGB 861404..862504 (+) 1101 WP_157659050.1 competence type IV pilus assembly protein ComGB Machinery gene
  PND17_RS04595 (PND17_04595) comGC 862501..862827 (+) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  PND17_RS04600 (PND17_04600) comGD 862787..863215 (+) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  PND17_RS04605 (PND17_04605) comGE 863187..863480 (+) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  PND17_RS04610 (PND17_04610) comGF 863464..863901 (+) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  PND17_RS04615 (PND17_04615) comGG 863879..864196 (+) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG Machinery gene
  PND17_RS04620 (PND17_04620) comGH 864241..865197 (+) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  PND17_RS04625 (PND17_04625) - 865253..866446 (+) 1194 WP_271298286.1 acetate kinase -
  PND17_RS04630 (PND17_04630) - 866695..866892 (+) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  PND17_RS04635 (PND17_04635) - 867135..867560 (+) 426 WP_271298285.1 CPBP family intramembrane glutamic endopeptidase -
  PND17_RS04640 (PND17_04640) - 867634..868077 (+) 444 WP_002946118.1 hypothetical protein -
  PND17_RS04645 (PND17_04645) - 868180..868842 (+) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11824.93 Da        Isoelectric Point: 10.6334

>NTDB_id=712901 PND17_RS04615 WP_002952035.1 863879..864196(+) (comGG) [Streptococcus thermophilus strain strain TSGB 4141]
MLLKKQVRGGVLLYALFMAGIFTLLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVIVRVASKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=712901 PND17_RS04615 WP_002952035.1 863879..864196(+) (comGG) [Streptococcus thermophilus strain strain TSGB 4141]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTACACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGATTGTCAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429
  comGG Streptococcus mutans UA159

45.455

94.286

0.429
  comGG/cglG Streptococcus pneumoniae Rx1

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae D39

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae R6

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae TIGR4

42.222

85.714

0.362