Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PND17_RS00485 Genome accession   NZ_CP116772
Coordinates   90005..90601 (+) Length   198 a.a.
NCBI ID   WP_011225694.1    Uniprot ID   P96053
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 85005..95601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS00460 (PND17_00460) - 85140..85352 (+) 213 WP_042798875.1 lysophospholipase -
  PND17_RS00465 (PND17_00465) - 85601..85792 (+) 192 WP_002950214.1 alpha/beta fold hydrolase -
  PND17_RS00470 (PND17_00470) - 85965..86819 (+) 855 WP_271298088.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  PND17_RS00475 (PND17_00475) - 86823..87659 (+) 837 WP_271298087.1 NAD(P)H-hydrate dehydratase -
  PND17_RS00480 (PND17_00480) pbp2b 87781..89895 (+) 2115 WP_271298086.1 penicillin-binding protein PBP2B -
  PND17_RS00485 (PND17_00485) recR 90005..90601 (+) 597 WP_011225694.1 recombination mediator RecR Machinery gene
  PND17_RS00490 (PND17_00490) - 90743..91539 (+) 797 Protein_93 PRD domain-containing protein -
  PND17_RS00495 (PND17_00495) ybeY 91759..92256 (+) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  PND17_RS00500 (PND17_00500) - 92237..92641 (+) 405 WP_002946201.1 diacylglycerol kinase family protein -
  PND17_RS00505 (PND17_00505) era 92660..93559 (+) 900 WP_002950226.1 GTPase Era -
  PND17_RS00510 (PND17_00510) mutM 93606..94427 (+) 822 WP_022096972.1 DNA-formamidopyrimidine glycosylase -
  PND17_RS00515 (PND17_00515) coaE 94424..95017 (+) 594 WP_271298112.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21767.98 Da        Isoelectric Point: 4.5326

>NTDB_id=712860 PND17_RS00485 WP_011225694.1 90005..90601(+) (recR) [Streptococcus thermophilus strain strain TSGB 4141]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=712860 PND17_RS00485 WP_011225694.1 90005..90601(+) (recR) [Streptococcus thermophilus strain strain TSGB 4141]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAACTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACTGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96053

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475