Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FFF71_RS06365 Genome accession   NZ_AP024114
Coordinates   1302542..1303279 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain JML285     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1297542..1308279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFF71_RS06335 (HmCmsJML285_1252) yfiL 1297700..1298065 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  FFF71_RS06340 (HmCmsJML285_1253) aroF 1298275..1299345 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FFF71_RS06345 (HmCmsJML285_1254) tyrA 1299356..1300477 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FFF71_RS06350 (HmCmsJML285_1255) pheA 1300520..1301680 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  FFF71_RS06355 pheL 1301779..1301826 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  FFF71_RS06360 (HmCmsJML285_1256) raiA 1301930..1302271 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FFF71_RS06365 (HmCmsJML285_1257) comL 1302542..1303279 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FFF71_RS06370 (HmCmsJML285_1258) rluD 1303414..1304394 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FFF71_RS06375 (HmCmsJML285_1259) yfiH 1304391..1305122 (+) 732 WP_001543096.1 purine nucleoside phosphorylase YfiH -
  FFF71_RS06380 (HmCmsJML285_1260) clpC 1305252..1307825 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=71270 FFF71_RS06365 WP_000197686.1 1302542..1303279(-) (comL) [Escherichia coli strain JML285]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=71270 FFF71_RS06365 WP_000197686.1 1302542..1303279(-) (comL) [Escherichia coli strain JML285]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGAGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment