Detailed information NTG0712687

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NP430_RS03690
• Genome accession: NZ_CP101910
• Coordinates: 839151..840017 (-)
• Length: 288 a.a.
• NCBI ID: WP_016501577.1
• Uniprot ID: -
• Organism: Pseudomonas putida strain ATCC 12633
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 834151..845017

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NP430_RS03660 (NP430_03660)	-	834877..836172 (-)	1296	WP_016501582.1	NAD(P)/FAD-dependent oxidoreductase	-
NP430_RS03665 (NP430_03665)	-	836257..836430 (-)	174	WP_013970765.1	DUF3094 family protein	-
NP430_RS03670 (NP430_03670)	-	836564..837193 (-)	630	WP_016501581.1	DUF1780 domain-containing protein	-
NP430_RS03675 (NP430_03675)	-	837387..838094 (+)	708	WP_016501580.1	energy-coupling factor ABC transporter permease	-
NP430_RS03680 (NP430_03680)	yacG	838331..838531 (-)	201	WP_016501579.1	DNA gyrase inhibitor YacG	-
NP430_RS03685 (NP430_03685)	coaE	838528..839151 (-)	624	WP_016501578.1	dephospho-CoA kinase	-
NP430_RS03690 (NP430_03690)	pilD	839151..840017 (-)	867	WP_016501577.1	A24 family peptidase	Machinery gene
NP430_RS03695 (NP430_03695)	-	840020..841228 (-)	1209	WP_016501576.1	type II secretion system F family protein	-
NP430_RS03700 (NP430_03700)	-	841445..841855 (+)	411	WP_016501575.1	pilin	-
NP430_RS03710 (NP430_03710)	-	842167..843495 (+)	1329	WP_016501574.1	integrase arm-type DNA-binding domain-containing protein	-
NP430_RS03715 (NP430_03715)	-	844390..844772 (+)	383	Protein_709	integrase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31803.96 Da
• Isoelectric Point: 7.1967

>NTDB_id=712687 NP430_RS03690 WP_016501577.1 839151..840017(-) (pilD) [Pseudomonas putida strain ATCC 12633]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEVLGLPLAQHERFDLCLPASRCPHCAHQIRA
WENIPVLSYLALSGRCSACKGRISPRYPLVEIASALLSLVVAWRFGASAEALLALPLTWCLLALSLIDADHQLLPDVLVL
PMLWLGLIVNAFGLYVPLADALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRLRRYAMGTAIPFGPYLAIAGWIAVLWGDEIYASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=712687 NP430_RS03690 WP_016501577.1 839151..840017(-) (pilD) [Pseudomonas putida strain ATCC 12633]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTCCTTACCCTGGCCACGGTGCTCGGCTTGCTGGTGGGCAG
CTTTCTCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAGGCGCAGGAGGTATTGGGGC
TGCCGCTTGCGCAACACGAACGGTTCGACCTGTGCCTGCCGGCATCCCGCTGCCCGCACTGCGCGCATCAGATTCGCGCG
TGGGAGAACATTCCGGTGCTCAGCTACCTGGCGTTGAGCGGGCGGTGCTCAGCCTGCAAAGGCCGTATCAGCCCGCGCTA
CCCGCTGGTCGAGATAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGTTTTGGCGCTTCGGCCGAGGCGTTGCTGG
CACTGCCGCTCACGTGGTGCCTGTTGGCCCTGAGCCTGATCGATGCGGACCACCAATTGCTGCCGGATGTGCTGGTGCTG
CCGATGCTGTGGCTTGGGCTGATCGTGAACGCCTTTGGCCTGTATGTGCCACTGGCCGACGCGTTGTGGGGCGCAGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTACGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGCGGTTGGCAGGTGCTGCCGTTGACGCTGCTGCTGTCGTCGGTGGTGGGGGCG
CTGGTTGGCCTGTGCCTGCTGCGTTTGCGCCGGTATGCGATGGGCACGGCGATACCGTTTGGCCCTTATCTGGCGATTGC
GGGGTGGATTGCTGTGCTCTGGGGTGATGAAATATACGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.623	95.833	0.514
pilD	Acinetobacter baumannii D1279779	50.534	97.569	0.493
pilD	Acinetobacter nosocomialis M2	49.822	97.569	0.486
pilD	Vibrio campbellii strain DS40M4	49.281	96.528	0.476
pilD	Neisseria gonorrhoeae MS11	49.442	93.403	0.462