Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   K6J73_RS00270 Genome accession   NZ_AP018780
Coordinates   56255..56971 (-) Length   238 a.a.
NCBI ID   WP_005651546.1    Uniprot ID   A0A0D0IHM0
Organism   Haemophilus influenzae strain CHBN-IV-1 isolate 13H36     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51255..61971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J73_RS00250 (CHBNIV1_00500) nrdR 51347..51796 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  K6J73_RS00255 (CHBNIV1_00510) recC 51851..55231 (-) 3381 WP_221253150.1 exodeoxyribonuclease V subunit gamma -
  K6J73_RS00260 (CHBNIV1_00520) comQ 55277..55564 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  K6J73_RS00265 (CHBNIV1_00530) comP 55557..56240 (-) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  K6J73_RS00270 (CHBNIV1_00540) comO 56255..56971 (-) 717 WP_005651546.1 type II secretion system protein J Machinery gene
  K6J73_RS00275 (CHBNIV1_00550) comN 56971..57483 (-) 513 WP_005651545.1 type II secretion system protein Machinery gene
  K6J73_RS00280 (CHBNIV1_00560) suhB 57683..58486 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  K6J73_RS00285 (CHBNIV1_00570) nrfE 58595..60502 (+) 1908 WP_110439959.1 heme lyase NrfEFG subunit NrfE -
  K6J73_RS00290 (CHBNIV1_00580) - 60502..61032 (+) 531 WP_005664151.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26759.12 Da        Isoelectric Point: 9.5508

>NTDB_id=71266 K6J73_RS00270 WP_005651546.1 56255..56971(-) (comO) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=71266 K6J73_RS00270 WP_005651546.1 56255..56971(-) (comO) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATTCAAACGCAAAATCAACACATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCACCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAGGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTTTGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0IHM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.58

100

0.996

Multiple sequence alignment