Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NPA43_RS10910 Genome accession   NZ_CP101833
Coordinates   2161618..2163351 (-) Length   577 a.a.
NCBI ID   WP_249705710.1    Uniprot ID   -
Organism   Bacillus pumilus strain NDY-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2156618..2168351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS10895 (NPA43_10895) - 2157507..2158607 (-) 1101 WP_099726692.1 Rap family tetratricopeptide repeat protein -
  NPA43_RS10900 (NPA43_10900) spo0A 2159054..2159857 (-) 804 WP_034319717.1 sporulation transcription factor Spo0A Regulator
  NPA43_RS10905 (NPA43_10905) spoIVB 2160142..2161419 (-) 1278 WP_256498769.1 SpoIVB peptidase -
  NPA43_RS10910 (NPA43_10910) recN 2161618..2163351 (-) 1734 WP_249705710.1 DNA repair protein RecN Machinery gene
  NPA43_RS10915 (NPA43_10915) ahrC 2163386..2163835 (-) 450 WP_099726688.1 transcriptional regulator AhrC/ArgR -
  NPA43_RS10920 (NPA43_10920) - 2163997..2164851 (-) 855 WP_034661248.1 TlyA family RNA methyltransferase -
  NPA43_RS10925 (NPA43_10925) dxs 2164848..2166749 (-) 1902 WP_099726687.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NPA43_RS10930 (NPA43_10930) - 2166901..2167800 (-) 900 WP_180275484.1 polyprenyl synthetase family protein -
  NPA43_RS10935 (NPA43_10935) - 2167784..2168044 (-) 261 WP_099726685.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64603.46 Da        Isoelectric Point: 4.8106

>NTDB_id=712234 NPA43_RS10910 WP_249705710.1 2161618..2163351(-) (recN) [Bacillus pumilus strain NDY-10]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFDLC
EEQGIDASDEMMILRRDMNQSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIVPALS
QYHEAYDQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLELGEDEKLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMASSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGATV
GEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQAELKDLYMEKSSFDTAFAI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTNVKSLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=712234 NPA43_RS10910 WP_249705710.1 2161618..2163351(-) (recN) [Bacillus pumilus strain NDY-10]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTTCT
AACAGGGGAAACAGGTGCCGGAAAATCTATCATGATTGACGCTGTCTCACTTCTTGTCGGGGGAAGAGGATCATCTGAAT
TTGTTCGTTACGGTGAAAAAAAAGCAGAGCTGGAAGGGCTTTTTCTTGTGCCGGCAGATCATCCTGTATTTGACCTATGC
GAAGAGCAAGGAATTGATGCATCGGATGAAATGATGATTCTTCGCCGTGATATGAATCAAAGCGGGAAAAGCATCTGCCG
CATTAATGGCAAGCTTGTCACGATCTCTCTTCTGAGAGAAGTAGGACGGCTTTTGCTCGATATACATGGACAGCACGATA
ATCAGCTGTTGATGGAGGATGAAAACCATTTGCATTTGCTTGATCAATTTGGGGCAGAAGAAATTGTACCTGCTTTATCA
CAATACCATGAAGCGTATGATCAATATACCAAGACAGCTCAAAAGCTAAAACAGCTGTCAGAAAATGAGCAGGAAATGGT
GCACCGTTTAGACTTACTACAATTTCAGCTGGAAGAGATTGAAGCGGCCCAATTAGAGCTGGGAGAAGATGAGAAGCTTC
AGGAAGAACGTCATCAAATCAGCAACTACGAAAAAATTTATTCCTCGCTTCAAAACGCGTATAACGCCCTGCGCAATGAG
CAAGGAGGGCTTGATTGGGTTGGGATGGCTTCAAGCGAGCTAGAGCAGGTTTCTGAGATCAATGATGATCTAAAAAAGCT
TTCTGAGCAAGTTTCGAACTCCTATTACTTATTAGAGGATTCTACCTTCCAAATGCGCAGCATGCTGGATCAGTTAGAAT
TCGACCCGGCGCGTCTTGACTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAGCGAAAGTATGGCGCAACGGTT
GGAGAAATCTTGGAGTATGCGGCTAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCACCTGCAAACGCT
CAAAAACAAACTGGATGCAATGAGCCGCGATGCACTGCTGGAAGCACTCAACGTGTCAGAGCTTCGTAAAAAATGGGCCA
AAAAGCTAGCGAAGCAAATCCAAGCAGAGTTAAAGGATTTGTATATGGAGAAATCATCCTTTGATACGGCTTTTGCCATT
CGCTATGCGCCCTTTGGCAGCACGGACTGCCCCCTTTTAGACGGAAAACCTGTCCAGCTCGGAAAAAACGGAATAGACCA
AGCACAATTTGTCATTTCTACAAATCCAGGCGAACCGATGAAATCTTTATCAAAAGTAGCCTCCGGTGGAGAAATTTCAC
GTGTCATGCTGGCAGTGAAGAGTATTTTCTCAGCCAAACAAGAAGTCACATCCATTATTTTCGATGAGGTTGATACAGGC
GTCAGCGGCAGGGTCGCACAGGCCATTGCCGAAAAAATTTATAAAGTAGCGGCAGGATCACAAGTGCTCTGCATCACACA
TCTGCCCCAAGTAGCTGCAATGGCTGATACCCATCTTTTCATTTCTAAACGCTCTAAAGCCGGCAGAACACTAACGAATG
TCAAATCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCAGGTGTGGAAGTCACTGAGCTGACAAAA
CAGCATGCAAAAGAATTATTGCACCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.39

100

0.754