Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NPA43_RS10900 Genome accession   NZ_CP101833
Coordinates   2159054..2159857 (-) Length   267 a.a.
NCBI ID   WP_034319717.1    Uniprot ID   A0A2G8IWA3
Organism   Bacillus pumilus strain NDY-10     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2154054..2164857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS10885 (NPA43_10885) - 2156272..2156508 (+) 237 WP_099726694.1 DUF2627 domain-containing protein -
  NPA43_RS10890 (NPA43_10890) - 2156543..2157280 (-) 738 WP_256498768.1 glycerophosphodiester phosphodiesterase -
  NPA43_RS10895 (NPA43_10895) - 2157507..2158607 (-) 1101 WP_099726692.1 Rap family tetratricopeptide repeat protein -
  NPA43_RS10900 (NPA43_10900) spo0A 2159054..2159857 (-) 804 WP_034319717.1 sporulation transcription factor Spo0A Regulator
  NPA43_RS10905 (NPA43_10905) spoIVB 2160142..2161419 (-) 1278 WP_256498769.1 SpoIVB peptidase -
  NPA43_RS10910 (NPA43_10910) recN 2161618..2163351 (-) 1734 WP_249705710.1 DNA repair protein RecN Machinery gene
  NPA43_RS10915 (NPA43_10915) ahrC 2163386..2163835 (-) 450 WP_099726688.1 transcriptional regulator AhrC/ArgR -
  NPA43_RS10920 (NPA43_10920) - 2163997..2164851 (-) 855 WP_034661248.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29891.41 Da        Isoelectric Point: 6.3913

>NTDB_id=712233 NPA43_RS10900 WP_034319717.1 2159054..2159857(-) (spo0A) [Bacillus pumilus strain NDY-10]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENSDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=712233 NPA43_RS10900 WP_034319717.1 2159054..2159857(-) (spo0A) [Bacillus pumilus strain NDY-10]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGATAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCCTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGACTCCGTGAAAACTCTGATATGACCAAGCAG
CCAAGTGTGATTATGCTAACGGCATTCGGACAAGAAGATGTAACGAAAAAAGCAGTCGATTTGGGTGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGAAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACGATT
ATTCATGAAATTGGCGTGCCAGCTCATATTAAAGGGTATTTATACTTAAGAGAAGCGATTTCTATGGTGTACAATGATAT
TGAGCTTCTAGGCAGCATTACAAAAGTATTGTATCCAGACATCGCGAAGAAATTTAACACGACAGCCAGCAGGGTGGAAC
GAGCAATTCGTCATGCCATTGAAGTCGCCTGGAGCAGAGGAAACATCGATTCCATTTCATCACTCTTTGGTTACACAGTC
AGCATGTCAAAAGCCAAACCGACCAATTCAGAATTTATTGCCATGGTGGCTGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IWA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.806

100

0.891