Detailed information NTG0712103

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NPJ86_RS21040
• Genome accession: NZ_CP101790
• Coordinates: 4303711..4304511 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain hvKP859
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4298711..4309511

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NPJ86_RS21005 (NPJ86_21005)	gspH	4298867..4299382 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
NPJ86_RS21010 (NPJ86_21010)	gspI	4299379..4299744 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NPJ86_RS21015 (NPJ86_21015)	gspJ	4299741..4300337 (+)	597	WP_019705881.1	type II secretion system minor pseudopilin GspJ	-
NPJ86_RS21020 (NPJ86_21020)	gspK	4300334..4301320 (+)	987	WP_130940368.1	type II secretion system minor pseudopilin GspK	-
NPJ86_RS21025 (NPJ86_21025)	gspL	4301307..4302500 (+)	1194	WP_073558002.1	type II secretion system protein GspL	-
NPJ86_RS21030 (NPJ86_21030)	-	4302493..4302978 (+)	486	WP_004145896.1	type II secretion system protein M	-
NPJ86_RS21035 (NPJ86_21035)	-	4302968..4303714 (+)	747	WP_023316460.1	type II secretion system protein N	-
NPJ86_RS21040 (NPJ86_21040)	pilD	4303711..4304511 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
NPJ86_RS21045 (NPJ86_21045)	hrpB	4304559..4306988 (-)	2430	WP_031588872.1	ATP-dependent helicase HrpB	-
NPJ86_RS21050 (NPJ86_21050)	thpR	4307061..4307597 (+)	537	WP_032416682.1	RNA 2',3'-cyclic phosphodiesterase	-
NPJ86_RS21055 (NPJ86_21055)	sfsA	4307597..4308313 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NPJ86_RS21060 (NPJ86_21060)	dksA	4308476..4308931 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=712103 NPJ86_RS21040 WP_004191960.1 4303711..4304511(+) (pilD) [Klebsiella pneumoniae strain hvKP859]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=712103 NPJ86_RS21040 WP_004191960.1 4303711..4304511(+) (pilD) [Klebsiella pneumoniae strain hvKP859]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGTGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACTCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421