Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NOX82_RS09685 Genome accession   NZ_CP101752
Coordinates   2114670..2115305 (+) Length   211 a.a.
NCBI ID   WP_009621398.1    Uniprot ID   A0A1A5CYN3
Organism   Pseudomonas citronellolis strain C12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2109670..2120305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOX82_RS09670 (NOX82_09670) - 2110201..2111451 (+) 1251 WP_256514736.1 lipoprotein-releasing ABC transporter permease subunit -
  NOX82_RS09675 (NOX82_09675) - 2111723..2112253 (-) 531 WP_256514737.1 DUF2062 domain-containing protein -
  NOX82_RS09680 (NOX82_09680) comA 2112390..2114597 (+) 2208 WP_256515350.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NOX82_RS09685 (NOX82_09685) exbB 2114670..2115305 (+) 636 WP_009621398.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NOX82_RS09690 (NOX82_09690) - 2115302..2115748 (+) 447 WP_074979867.1 biopolymer transporter ExbD -
  NOX82_RS09695 (NOX82_09695) lpxK 2115748..2116746 (+) 999 WP_253390409.1 tetraacyldisaccharide 4'-kinase -
  NOX82_RS09700 (NOX82_09700) - 2116787..2116972 (+) 186 WP_009621404.1 Trm112 family protein -
  NOX82_RS09705 (NOX82_09705) kdsB 2116986..2117750 (+) 765 WP_253390410.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NOX82_RS09710 (NOX82_09710) - 2117750..2118211 (+) 462 WP_116424866.1 low molecular weight protein-tyrosine-phosphatase -
  NOX82_RS09715 (NOX82_09715) murB 2118208..2119227 (+) 1020 WP_253390411.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22919.12 Da        Isoelectric Point: 8.0527

>NTDB_id=711971 NOX82_RS09685 WP_009621398.1 2114670..2115305(+) (exbB) [Pseudomonas citronellolis strain C12]
MWELVKAGGWMMLPIILSSIAATAIVAERLWTLRRSRIAPPQLLGQVWKQIKDKKLNSQALKELKASSPLGEVLAAGLVN
SKHGREIMKECIEEAAGRVIHEMERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPQLAGGISKALVTTAS
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEMVQGDREVDLSEDGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=711971 NOX82_RS09685 WP_009621398.1 2114670..2115305(+) (exbB) [Pseudomonas citronellolis strain C12]
GTGTGGGAACTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCACCGCCATCGTCGC
CGAACGACTCTGGACCCTGCGCCGCAGCCGCATCGCCCCGCCGCAGCTGCTGGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGCTGAACAGCCAGGCGCTCAAGGAGCTCAAGGCGTCTTCCCCGCTGGGCGAGGTGCTCGCCGCCGGCCTGGTCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGGCCGGGTGATCCACGAGATGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCCCCGCAGCTCGCCGGCGGCATCTCCAAGGCCCTGGTGACCACCGCCTCC
GGCCTGATCGTGGCCATCCCCGCCGTGTTCTTCCATCGCTACCTGCTGCGCCGCGTCGATGAGCTGGTGGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGCGACCGCGAGGTCGACCTCTCCGAGGATGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5CYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806