Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K6J69_RS04530 Genome accession   NZ_AP018777
Coordinates   906872..909238 (+) Length   788 a.a.
NCBI ID   WP_110431094.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 901872..914238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS04505 - 902334..903518 (-) 1185 Protein_847 N-acetylmuramoyl-L-alanine amidase -
  K6J69_RS04510 (CHBNIII6_08500) tsaE 903554..904003 (-) 450 WP_221257499.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  K6J69_RS04515 (CHBNIII6_08510) folK 904079..904561 (-) 483 WP_110431095.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K6J69_RS04520 (CHBNIII6_08520) pcnB 904570..905927 (-) 1358 Protein_850 polynucleotide adenylyltransferase PcnB -
  K6J69_RS04525 (CHBNIII6_08530) dksA 906175..906612 (-) 438 WP_005652560.1 RNA polymerase-binding protein DksA -
  K6J69_RS04530 (CHBNIII6_08540) rec2 906872..909238 (+) 2367 WP_110431094.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K6J69_RS04535 (CHBNIII6_08550) msbA 909279..911042 (+) 1764 WP_110431093.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K6J69_RS04540 (CHBNIII6_08560) lpxK 911115..912113 (+) 999 WP_110431092.1 tetraacyldisaccharide 4'-kinase -
  K6J69_RS04545 (CHBNIII6_08570) kdsB 912184..912948 (+) 765 WP_110431091.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89633.08 Da        Isoelectric Point: 9.8382

>NTDB_id=71187 K6J69_RS04530 WP_110431094.1 906872..909238(+) (rec2) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MKLNLITLAVLLIVADLTLLFLPQSLLLPWQVALVIALVLIFLFIFWRKNFLVSLAFFVASLGYFHHSALSLLQQAQRIS
AQKQMVTFEIQEILHQQDYQTPIATATLTDNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGSVKSAAKIADVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFSPTHFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISTLVFVFFVQIMRRYYSPFQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILGLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LIAVPIYSFFLVPLILFAVFTNGAMFSWQLANKLAEGITGLISVFQGNWLTVSFNLALFLTALCGGIFMLIIWRIYREPE
ASPSTWKIKRPRFFTLNLSKPLLKNERINVLLCSFGIILMCFMILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMTELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDLA
IISSGRWNPWKFPHYLVMERFHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTEFSPWYVRVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=71187 K6J69_RS04530 WP_110431094.1 906872..909238(+) (rec2) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTTTGGCGTAAAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCTTCTCTTGGCTATTTTCATCATTCGGCTTTGAGTTTATTACAACAAGCTCAACGTATTAGC
GCTCAAAAGCAAATGGTGACTTTTGAGATTCAAGAAATTTTGCATCAACAGGATTATCAAACACCTATCGCCACAGCAAC
ATTGACGGATAACTTACAAGAGCAACGAATTTTTTTAAATTGGAAAGCAAAAGAGGTGCCTCAACTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCACGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAA
GGAATTACAGCTGTTGGAAGCGTAAAAAGTGCGGCGAAAATTGCTGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGATTATCTCTACAAGGTTTATTGATTGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACGAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTACTTGGCTCGTGTTGTGCAAGTATTTTCCCCAACCCATTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAACACTTGTTT
TCGTTTTCTTCGTTCAAATAATGAGGAGATATTATTCGCCTTTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCCCTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGTCCCTTTTCCCCAAAAGTGCGGTGGATTTTGGGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGTTTATCGTTGAGTGGATTTTTAGCCAAT
CTTATTGCTGTTCCAATTTATAGTTTTTTCCTCGTGCCATTAATTTTATTTGCCGTTTTTACTAACGGCGCAATGTTTTC
TTGGCAACTAGCAAATAAGCTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTATTTTTAACCGCACTTTGTGGCGGAATATTTATGTTAATTATTTGGCGTATTTATCGAGAACCAGAG
GCTTCACCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCTATGTTCTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTGAGCAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGGCTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGACTGAATTAGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCATGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGAAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGACGTGATTGGCATTGGCAAGGG
CTACATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGCATAGCGTTTTACTGACTGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGAAAAATTG
ATGTGTTACAAGTGGGGCATCACGGAAGTAAAACATCGACAAGTGAATATTTACTTTCCCAGGTTAGACCAGATTTGGCG
ATTATTTCTAGTGGACGTTGGAATCCGTGGAAATTCCCCCATTATTTGGTTATGGAAAGGTTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAG
AATTTTCCCCTTGGTATGTGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-172)

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

93.147

100

0.931

Multiple sequence alignment