Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NPA28_RS11515 Genome accession   NZ_CP101718
Coordinates   2307242..2307862 (+) Length   206 a.a.
NCBI ID   WP_044155259.1    Uniprot ID   -
Organism   Bacillus halotolerans strain S-5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2302242..2312862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS11475 (NPA28_11475) - 2303381..2303887 (-) 507 WP_193659402.1 PTS glucose transporter subunit IIA -
  NPA28_RS11480 (NPA28_11480) - 2304024..2304443 (+) 420 WP_059352454.1 Hsp20/alpha crystallin family protein -
  NPA28_RS11485 (NPA28_11485) - 2304465..2304839 (-) 375 WP_044155301.1 YppG family protein -
  NPA28_RS11490 (NPA28_11490) - 2305026..2305214 (+) 189 WP_044155293.1 YppF family protein -
  NPA28_RS11495 (NPA28_11495) - 2305249..2305620 (-) 372 WP_095532787.1 YppE family protein -
  NPA28_RS11500 (NPA28_11500) - 2305666..2305911 (-) 246 WP_217827721.1 DUF5446 family protein -
  NPA28_RS11505 (NPA28_11505) sspM 2306109..2306213 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  NPA28_RS11510 (NPA28_11510) - 2306239..2307201 (-) 963 WP_256766216.1 DUF2515 domain-containing protein -
  NPA28_RS11515 (NPA28_11515) recU 2307242..2307862 (+) 621 WP_044155259.1 Holliday junction resolvase RecU Machinery gene
  NPA28_RS11520 (NPA28_11520) - 2307884..2310628 (+) 2745 WP_217827722.1 PBP1A family penicillin-binding protein -
  NPA28_RS11525 (NPA28_11525) - 2310702..2311196 (-) 495 WP_193659407.1 YpoC family protein -
  NPA28_RS11530 (NPA28_11530) nth 2311193..2311852 (-) 660 WP_217827723.1 endonuclease III -
  NPA28_RS11535 (NPA28_11535) dnaD 2311871..2312569 (-) 699 WP_217827724.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23935.07 Da        Isoelectric Point: 9.6373

>NTDB_id=711757 NPA28_RS11515 WP_044155259.1 2307242..2307862(+) (recU) [Bacillus halotolerans strain S-5]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEADRLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=711757 NPA28_RS11515 WP_044155259.1 2307242..2307862(+) (recU) [Bacillus halotolerans strain S-5]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGTATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGCCAGGTTTATTTTTTAGAAGCCGATAGGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

96.117

100

0.961