Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NPA28_RS10550 Genome accession   NZ_CP101718
Coordinates   2147545..2148675 (+) Length   376 a.a.
NCBI ID   WP_044155597.1    Uniprot ID   -
Organism   Bacillus halotolerans strain S-5     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2142545..2153675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS10510 (NPA28_10510) - 2142720..2143088 (-) 369 WP_106294154.1 hypothetical protein -
  NPA28_RS10515 (NPA28_10515) - 2143266..2144009 (-) 744 WP_217827679.1 alpha/beta fold hydrolase -
  NPA28_RS10520 (NPA28_10520) - 2144249..2144389 (+) 141 WP_217827680.1 hypothetical protein -
  NPA28_RS10525 (NPA28_10525) - 2144480..2144710 (+) 231 WP_106294150.1 hypothetical protein -
  NPA28_RS21065 - 2144718..2144777 (-) 60 WP_255004945.1 hypothetical protein -
  NPA28_RS10530 (NPA28_10530) - 2144893..2145039 (-) 147 WP_306173880.1 UPF0715 family protein -
  NPA28_RS10535 (NPA28_10535) - 2145367..2145512 (-) 146 Protein_2033 helix-turn-helix domain-containing protein -
  NPA28_RS10540 (NPA28_10540) - 2146782..2147042 (+) 261 WP_082687961.1 hypothetical protein -
  NPA28_RS10545 (NPA28_10545) - 2147290..2147460 (+) 171 WP_229042970.1 hypothetical protein -
  NPA28_RS10550 (NPA28_10550) rapC 2147545..2148675 (+) 1131 WP_044155597.1 tetratricopeptide repeat protein Regulator
  NPA28_RS10555 (NPA28_10555) - 2148665..2148808 (+) 144 WP_162264507.1 hypothetical protein -
  NPA28_RS10560 (NPA28_10560) - 2148855..2149184 (-) 330 Protein_2038 UV damage repair protein UvrX -
  NPA28_RS10565 (NPA28_10565) ppsA 2149479..2152082 (-) 2604 WP_217827681.1 phosphoenolpyruvate synthase -
  NPA28_RS10570 (NPA28_10570) - 2152286..2152742 (-) 457 Protein_2040 IS3 family transposase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44276.06 Da        Isoelectric Point: 6.0304

>NTDB_id=711756 NPA28_RS10550 WP_044155597.1 2147545..2148675(+) (rapC) [Bacillus halotolerans strain S-5]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEARPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIDQAVSLYENDKSDLLPHTLFTLTQIHFKMKDIEKALVLYKKGIEKAKAINDDVLIAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDVRIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=711756 NPA28_RS10550 WP_044155597.1 2147545..2148675(+) (rapC) [Bacillus halotolerans strain S-5]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGCACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ATGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCCTAAAAGACTCAAAAGCCATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGGAACTGTTATTATAAAATGAAAGAGTATGACAAAGCTGCT
GAATATATTGATCAAGCAGTCTCATTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACGCTGACACA
AATTCACTTTAAAATGAAGGATATTGAAAAAGCCTTGGTTCTTTACAAAAAAGGAATCGAGAAAGCAAAAGCAATAAATG
ACGATGTCTTAATTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGTCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.532

100

0.505
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455