Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   NPA28_RS06125 Genome accession   NZ_CP101718
Coordinates   1241234..1242187 (+) Length   317 a.a.
NCBI ID   WP_044156402.1    Uniprot ID   -
Organism   Bacillus halotolerans strain S-5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1236234..1247187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS06100 (NPA28_06100) argF 1238039..1239011 (+) 973 Protein_1145 ornithine carbamoyltransferase -
  NPA28_RS06105 (NPA28_06105) - 1239097..1239276 (+) 180 WP_003239319.1 YjzC family protein -
  NPA28_RS06110 (NPA28_06110) - 1239322..1239507 (-) 186 WP_010333727.1 YjzD family protein -
  NPA28_RS06115 (NPA28_06115) - 1239766..1240503 (+) 738 WP_217827154.1 hypothetical protein -
  NPA28_RS06120 (NPA28_06120) - 1240580..1241143 (+) 564 WP_256766964.1 hypothetical protein -
  NPA28_RS06125 (NPA28_06125) med 1241234..1242187 (+) 954 WP_044156402.1 BMP family ABC transporter substrate-binding protein Regulator
  NPA28_RS06130 (NPA28_06130) comZ 1242202..1242393 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  NPA28_RS06135 (NPA28_06135) - 1242423..1242653 (-) 231 WP_082687943.1 hypothetical protein -
  NPA28_RS06140 (NPA28_06140) fabH 1242819..1243757 (+) 939 WP_010333732.1 beta-ketoacyl-ACP synthase III -
  NPA28_RS06145 (NPA28_06145) fabF 1243780..1245018 (+) 1239 WP_217827152.1 beta-ketoacyl-ACP synthase II -
  NPA28_RS06150 (NPA28_06150) - 1245098..1245883 (+) 786 WP_044156399.1 DUF2268 domain-containing protein -
  NPA28_RS06155 (NPA28_06155) appD 1246074..1247060 (+) 987 WP_044156398.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35286.89 Da        Isoelectric Point: 4.8692

>NTDB_id=711740 NPA28_RS06125 WP_044156402.1 1241234..1242187(+) (med) [Bacillus halotolerans strain S-5]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSTYNVDVYYKEGVKTDEDIINAIED
FHKRGVNLLFGHGSEYEEVFNLVSEDYPDMQFVISNAKAKADNVTSVHLSGEAIGFFGGMTAAHMSKTNQVGVIASFSWQ
PEVDGFIKGAKYENPNIEVNTKYTDHWDDDSTAVNLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFDKGTLKGGDHYYDLKSRVVEMGTFSPLVDKAFQKRIAKLVKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=711740 NPA28_RS06125 WP_044156402.1 1241234..1242187(+) (med) [Bacillus halotolerans strain S-5]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTAAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCTACATACAATGTGGACGTCTACTATAAAGAAGGCGTAAAAACAGATGAAGATATTATAAATGCGATTGAAGAT
TTTCATAAGCGCGGCGTCAATCTCCTCTTTGGCCATGGCAGTGAGTATGAAGAAGTATTTAACTTGGTGAGTGAAGACTA
TCCGGATATGCAGTTTGTGATCTCAAATGCAAAAGCAAAAGCGGACAATGTCACAAGCGTCCATCTCAGCGGGGAAGCAA
TCGGCTTTTTCGGCGGAATGACCGCTGCCCATATGTCAAAAACCAATCAGGTCGGCGTCATCGCTTCTTTTTCATGGCAG
CCAGAAGTTGACGGCTTTATAAAAGGGGCTAAGTATGAAAATCCTAATATAGAAGTGAATACAAAATATACGGATCACTG
GGATGATGATTCGACTGCGGTGAACCTTTATCAAAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCTGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGCCTATATGCGATCGGCTATGTCACAGATCAATCCGATCTT
GGCGAGAACACCGTGTTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATTATAGCTGAGCAATTCGACAAAGG
CACTTTAAAAGGCGGCGACCACTATTACGATCTGAAAAGCCGAGTTGTCGAAATGGGAACCTTCAGTCCGCTTGTAGACA
AAGCCTTTCAGAAAAGAATCGCCAAACTGGTCAAAACATATAACAAAACAGGTGAACTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

93.375

100

0.934