Detailed information NTG0711622

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NO460_RS07320
• Genome accession: NZ_CP101702
• Coordinates: 1550726..1552177 (-)
• Length: 483 a.a.
• NCBI ID: WP_171970756.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzae strain CIX4509
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1545977..1557028	1550726..1552177	within	0

Gene organization within MGE regions

Location: 1545977..1557028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NO460_RS07295 (NO460_07295)	-	1546573..1548099 (+)	1527	WP_041182621.1	membrane protein	-
NO460_RS07300 (NO460_07300)	pilB	1548134..1549867 (+)	1734	WP_011408072.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NO460_RS07305 (NO460_07305)	-	1549876..1550100 (-)	225	WP_339325312.1	cell filamentation protein Fic	-
NO460_RS07310 (NO460_07310)	-	1550224..1550385 (-)	162	WP_153296778.1	hypothetical protein	-
NO460_RS07315 (NO460_07315)	-	1550447..1550653 (-)	207	WP_027703281.1	YhfG family protein	-
NO460_RS07320 (NO460_07320)	pilR	1550726..1552177 (-)	1452	WP_171970756.1	sigma-54 dependent transcriptional regulator	Regulator
NO460_RS07325 (NO460_07325)	-	1552448..1554061 (-)	1614	WP_012444444.1	HAMP domain-containing sensor histidine kinase	-
NO460_RS07330 (NO460_07330)	sucC	1554295..1555464 (+)	1170	WP_011258367.1	ADP-forming succinate--CoA ligase subunit beta	-
NO460_RS07335 (NO460_07335)	sucD	1555489..1556364 (+)	876	WP_012444445.1	succinate--CoA ligase subunit alpha	-
NO460_RS07340 (NO460_07340)	-	1556537..1557028 (+)	492	WP_027703282.1	hypothetical protein	-

Sequence

Protein

• Length: 483 a.a.
• Molecular weight: 52446.18 Da
• Isoelectric Point: 6.8290

>NTDB_id=711622 NO460_RS07320 WP_171970756.1 1550726..1552177(-) (pilR) [Xanthomonas oryzae pv. oryzae strain CIX4509]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide

• Length: 1452 bp

>NTDB_id=711622 NO460_RS07320 WP_171970756.1 1550726..1552177(-) (pilR) [Xanthomonas oryzae pv. oryzae strain CIX4509]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (440-480)

• Sigma-54 interaction domain (Sigma54_activat) (161-326)

• Response regulator receiver domain (Response_reg) (28-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.987	95.652	0.602
pilR	Acinetobacter baumannii strain A118	48.268	95.652	0.462