Detailed information NTG0711598

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NOV18_RS03330
• Genome accession: NZ_CP101700
• Coordinates: 718671..719537 (-)
• Length: 288 a.a.
• NCBI ID: WP_054572236.1
• Uniprot ID: A0AAJ5I9S5
• Organism: Pseudomonas asiatica strain MD9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 713671..724537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NOV18_RS03295 (NOV18_03295)	-	713885..715180 (-)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-
NOV18_RS03300 (NOV18_03300)	-	715265..715438 (-)	174	WP_013970765.1	DUF3094 family protein	-
NOV18_RS03305 (NOV18_03305)	-	715572..716201 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
NOV18_RS03310 (NOV18_03310)	-	716257..716688 (-)	432	WP_054573229.1	hypothetical protein	-
NOV18_RS03315 (NOV18_03315)	-	716775..717482 (+)	708	WP_043935298.1	energy-coupling factor ABC transporter permease	-
NOV18_RS03320 (NOV18_03320)	yacG	717851..718051 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
NOV18_RS03325 (NOV18_03325)	coaE	718048..718671 (-)	624	WP_013970769.1	dephospho-CoA kinase	-
NOV18_RS03330 (NOV18_03330)	pilD	718671..719537 (-)	867	WP_054572236.1	A24 family peptidase	Machinery gene
NOV18_RS03335 (NOV18_03335)	-	719540..720748 (-)	1209	WP_061305414.1	type II secretion system F family protein	-
NOV18_RS03340 (NOV18_03340)	-	720964..721374 (+)	411	WP_054572238.1	pilin	-
NOV18_RS03350 (NOV18_03350)	-	722186..722479 (+)	294	WP_239688263.1	hypothetical protein	-
NOV18_RS03355 (NOV18_03355)	-	723256..724464 (+)	1209	WP_256381927.1	SIR2 family protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32045.24 Da
• Isoelectric Point: 7.9596

>NTDB_id=711598 NOV18_RS03330 WP_054572236.1 718671..719537(-) (pilD) [Pseudomonas asiatica strain MD9]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVEVASALLSLVVAWRFGVSPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYIPLTSALWGAVAGYLSLWSVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=711598 NOV18_RS03330 WP_054572236.1 718671..719537(-) (pilD) [Pseudomonas asiatica strain MD9]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTCTCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAAT
TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGTGCGCATCGGATTCGCGCA
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCGTTGGTGGAGGTGGCCAGCGCGCTGCTGTCGCTAGTGGTGGCCTGGCGCTTTGGTGTTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAATGCCTTCGGCCTCTACATTCCGCTGACCAGCGCACTGTGGGGTGCGGTGGC
CGGGTACCTCAGCCTGTGGTCGGTGTACTGGGTATTCAAGCTGGTTACCGGCAAGGAGGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCCATGGGCACCGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.545	95.486	0.521
pilD	Acinetobacter baumannii D1279779	52.143	97.222	0.507
pilD	Acinetobacter nosocomialis M2	51.429	97.222	0.5
pilD	Vibrio campbellii strain DS40M4	50.178	97.569	0.49
pilD	Neisseria gonorrhoeae MS11	50.943	92.014	0.469