Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   NM620_RS02020 Genome accession   NZ_CP101694
Coordinates   416629..417240 (-) Length   203 a.a.
NCBI ID   WP_080174519.1    Uniprot ID   A0A1T4SNL4
Organism   Photobacterium toruni strain WD2103     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 411629..422240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM620_RS02005 - 412729..413742 (+) 1014 WP_080174516.1 Fe(3+) ABC transporter substrate-binding protein -
  NM620_RS02010 - 413913..415541 (+) 1629 WP_256383613.1 iron ABC transporter permease -
  NM620_RS02015 - 415541..416581 (+) 1041 WP_256383614.1 ABC transporter ATP-binding protein -
  NM620_RS02020 opaR 416629..417240 (-) 612 WP_080174519.1 TetR/AcrR family transcriptional regulator Regulator
  NM620_RS02025 hpt 417465..417998 (+) 534 WP_256383615.1 hypoxanthine phosphoribosyltransferase -
  NM620_RS02030 can 418047..418730 (-) 684 WP_080174521.1 carbonate dehydratase -
  NM620_RS02035 - 418849..419784 (+) 936 WP_256383616.1 ABC transporter ATP-binding protein -
  NM620_RS02040 - 419784..420554 (+) 771 WP_080174523.1 ABC transporter permease -
  NM620_RS02045 panC 420660..421553 (-) 894 WP_080174524.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23398.73 Da        Isoelectric Point: 6.4852

>NTDB_id=711570 NM620_RS02020 WP_080174519.1 416629..417240(-) (opaR) [Photobacterium toruni strain WD2103]
MDTITKKPRTRLSPEKRKQQLLDYSIEVFSRRGIGRAGHADIAEMANVSVATVFNYFPTREALVEQVLMEVATQFNDLLT
ECIGAPNKALHARLTCISNNLIDTVLEQQDWIKVWFEWSTSVRDDVWPQFIESNQKNLKQVQKAFTQAIENGEINSVQTP
ENLAKMLHGMCYVIYMQANQHPDQDILREQAQIYLQVLTQKTK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=711570 NM620_RS02020 WP_080174519.1 416629..417240(-) (opaR) [Photobacterium toruni strain WD2103]
ATGGATACGATTACCAAAAAACCACGTACACGCTTGTCTCCTGAAAAAAGAAAACAACAATTACTTGATTACTCAATTGA
AGTTTTTTCTCGCCGTGGTATTGGCCGCGCAGGTCATGCTGATATTGCTGAAATGGCTAATGTTTCGGTTGCGACTGTTT
TTAACTATTTTCCAACTAGGGAAGCACTAGTTGAACAAGTATTAATGGAAGTTGCCACCCAATTTAATGATTTACTGACT
GAATGTATTGGTGCGCCCAATAAAGCCTTACATGCGCGCTTAACCTGCATCAGCAATAACTTAATTGATACCGTCTTAGA
GCAGCAAGATTGGATCAAAGTCTGGTTTGAATGGAGTACATCAGTACGTGATGATGTTTGGCCACAATTTATTGAAAGCA
ATCAAAAAAATCTTAAGCAAGTGCAAAAAGCATTTACTCAAGCAATCGAGAATGGCGAAATAAATTCAGTTCAAACTCCA
GAGAACTTAGCTAAGATGTTACATGGCATGTGTTATGTGATTTACATGCAAGCAAATCAACACCCAGATCAAGATATCCT
GCGTGAGCAAGCTCAAATTTATCTGCAAGTTCTAACTCAGAAAACTAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4SNL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

52

98.522

0.512
  hapR Vibrio cholerae C6706

45.408

96.552

0.438
  hapR Vibrio cholerae strain A1552

45.408

96.552

0.438