Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NO469_RS00040 Genome accession   NZ_CP101685
Coordinates   9543..10094 (+) Length   183 a.a.
NCBI ID   WP_081537629.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain L.S.05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4543..15094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO469_RS00030 (NO469_00030) gyrA 6443..8995 (+) 2553 WP_256309865.1 DNA gyrase subunit A -
  NO469_RS00035 (NO469_00035) rpsF 9207..9503 (+) 297 WP_269148675.1 30S ribosomal protein S6 -
  NO469_RS00040 (NO469_00040) ssb 9543..10094 (+) 552 WP_081537629.1 single-stranded DNA-binding protein Machinery gene
  NO469_RS00045 (NO469_00045) rpsR 10116..10352 (+) 237 WP_003701427.1 30S ribosomal protein S18 -
  NO469_RS00050 (NO469_00050) - 10403..11266 (-) 864 WP_250200722.1 NAD(P)-dependent oxidoreductase -
  NO469_RS00055 (NO469_00055) - 11414..12427 (+) 1014 WP_250200723.1 glycosyltransferase family 2 protein -
  NO469_RS00060 (NO469_00060) - 12655..13437 (+) 783 WP_003705642.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20212.76 Da        Isoelectric Point: 4.4463

>NTDB_id=711495 NO469_RS00040 WP_081537629.1 9543..10094(+) (ssb) [Ligilactobacillus salivarius strain L.S.05]
MINRAILVGRLTRDPDLRYTASGAAVATFTVAVNRQFTNQQGEREADFINCVMWRKPAENFANFTHKGSLVGIDGRIQTR
SYENQQGTRVYVTEVVAENFSLLESRAEADRYREQHGMTQNNYGNNAPSQNQASQFDSNPFGDSQSNNSFGGNTPSNNGA
DNSADPFADNGQSIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=711495 NO469_RS00040 WP_081537629.1 9543..10094(+) (ssb) [Ligilactobacillus salivarius strain L.S.05]
GTGATTAATAGAGCTATTCTAGTAGGTCGTTTAACAAGAGATCCTGATTTACGTTACACGGCTTCTGGAGCTGCGGTAGC
TACATTTACTGTTGCTGTAAATCGTCAATTTACTAACCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTAATGT
GGCGTAAACCAGCAGAAAATTTTGCTAACTTTACTCATAAAGGTTCATTGGTTGGGATTGACGGACGAATTCAAACTCGT
TCATATGAAAACCAACAAGGAACGAGAGTATATGTTACAGAAGTTGTAGCTGAGAATTTCTCATTGTTGGAATCACGTGC
CGAAGCAGATCGTTATCGTGAACAACATGGAATGACACAAAATAATTACGGAAATAATGCTCCTTCGCAAAATCAAGCAT
CACAGTTTGATAGCAATCCATTCGGTGATTCTCAATCAAATAATAGTTTTGGTGGAAACACACCATCAAATAATGGAGCA
GATAATAGTGCTGATCCATTTGCTGATAATGGACAATCTATTGATATTTCTGATGATGACTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.027

100

0.65
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.831

100

0.568