Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   NO220_RS14785 Genome accession   NZ_CP101661
Coordinates   3008550..3009536 (-) Length   328 a.a.
NCBI ID   WP_269321599.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B408     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3003550..3014536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO220_RS14750 (NO220_14750) - 3003806..3004282 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  NO220_RS14755 (NO220_14755) - 3004282..3004566 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  NO220_RS14760 (NO220_14760) mnhG 3004550..3004924 (+) 375 WP_046560012.1 monovalent cation/H(+) antiporter subunit G -
  NO220_RS14765 (NO220_14765) - 3004964..3005347 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  NO220_RS14770 (NO220_14770) comA 3005369..3006013 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  NO220_RS14775 (NO220_14775) comP 3006094..3008397 (-) 2304 WP_003152050.1 histidine kinase Regulator
  NO220_RS14780 (NO220_14780) comX 3008417..3008596 (-) 180 WP_306383677.1 competence pheromone ComX -
  NO220_RS14785 (NO220_14785) comQ 3008550..3009536 (-) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  NO220_RS14790 (NO220_14790) degQ 3009667..3009807 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  NO220_RS14795 (NO220_14795) - 3010273..3010614 (+) 342 WP_014305721.1 hypothetical protein -
  NO220_RS14800 (NO220_14800) - 3010621..3011841 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  NO220_RS14805 (NO220_14805) - 3011971..3013437 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  NO220_RS14810 (NO220_14810) - 3013455..3014006 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  NO220_RS14815 (NO220_14815) - 3014103..3014501 (-) 399 WP_003152031.1 YueI family protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 37795.36 Da        Isoelectric Point: 5.6937

>NTDB_id=711457 NO220_RS14785 WP_269321599.1 3008550..3009536(-) (comQ) [Bacillus amyloliquefaciens strain B408]
MKTIIEQMCLDANQIKNRMKSIIERNIFNEHLMQLLLRFIEPKKNFSLAESAVLHYVIFDGENQETAVNLGAAIEILTLT
SDIIDDLEDEDNRDAPWMKIDRSLALSAAFSLYTAGLQSINSISTNPLVIKYVLKYIQDAMQGQHDDLINKPETEDECLE
VIKLKCGSLFALANVTGTLLATGEFNKSVESYSYYKGIFEQISGDYHAIFKDNTSDILKDKHTLINLYLKRLFNKSSQEL
LRIFSDQKLYSQLRLNKKEFIQKLYDSGASQYVSVLYQLYMHKCGTEVENLNLDIKKIKIIKKHLLNNKNNKKDDEDAEF
NKLFFELS

Nucleotide


Download         Length: 987 bp        

>NTDB_id=711457 NO220_RS14785 WP_269321599.1 3008550..3009536(-) (comQ) [Bacillus amyloliquefaciens strain B408]
GTGAAGACAATTATTGAGCAAATGTGTTTAGATGCCAACCAAATCAAGAATAGAATGAAGAGTATAATAGAGCGGAACAT
ATTTAATGAACATCTAATGCAGCTCCTTCTTCGTTTTATTGAACCAAAAAAAAATTTTTCTCTAGCTGAATCAGCTGTTT
TGCATTATGTGATCTTTGACGGCGAAAATCAAGAAACCGCAGTGAACTTAGGTGCCGCTATTGAAATTCTTACACTTACT
TCCGATATAATTGATGACCTGGAAGATGAGGATAATCGAGATGCTCCTTGGATGAAGATAGATCGTTCACTAGCATTAAG
TGCAGCATTTTCATTATACACAGCAGGATTGCAAAGCATTAATTCGATTAGTACGAATCCTTTAGTGATTAAGTATGTAT
TAAAATATATTCAAGATGCAATGCAGGGTCAACATGATGATTTGATCAATAAACCAGAGACAGAAGATGAATGTTTAGAG
GTAATCAAGTTAAAATGCGGAAGTTTATTTGCGTTAGCAAATGTTACTGGTACGCTTTTAGCAACTGGAGAATTCAATAA
GTCTGTTGAAAGTTATTCCTATTATAAAGGGATATTTGAACAAATTTCCGGTGATTATCATGCTATTTTTAAGGATAATA
CTAGTGATATTCTGAAAGATAAACATACATTGATTAATTTATATCTTAAGCGCTTGTTTAATAAGTCTTCTCAAGAATTG
CTTCGTATATTCTCAGATCAAAAATTATATTCGCAACTGCGGCTTAATAAAAAAGAGTTTATTCAAAAGCTGTATGATTC
TGGAGCATCTCAATATGTTTCGGTTTTATACCAACTATACATGCATAAGTGTGGAACTGAAGTTGAAAATTTAAATTTAG
ATATAAAGAAGATAAAAATAATAAAAAAACACTTGTTGAATAATAAGAATAATAAGAAGGATGATGAAGATGCAGAATTT
AATAAATTATTTTTTGAATTATCCTGA

Domains


Predicted by InterproScan.

(59-245)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

61.246

88.11

0.54