Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   K6J67_RS03260 Genome accession   NZ_AP018776
Coordinates   645073..645612 (-) Length   179 a.a.
NCBI ID   WP_005654843.1    Uniprot ID   A0A0H3PFD4
Organism   Haemophilus influenzae strain CHBN-III-5 isolate 13H30     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 640073..650612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J67_RS03230 (CHBNIII5_06200) fdx 640476..640817 (+) 342 WP_005656373.1 ISC system 2Fe-2S type ferredoxin -
  K6J67_RS03235 (CHBNIII5_06210) iscX 640817..641011 (+) 195 WP_005659903.1 Fe-S cluster assembly protein IscX -
  K6J67_RS03240 (CHBNIII5_06220) - 641062..641676 (-) 615 WP_005691752.1 YfgM family protein -
  K6J67_RS03245 (CHBNIII5_06230) hisS 641694..642965 (-) 1272 WP_050822781.1 histidine--tRNA ligase -
  K6J67_RS03250 (CHBNIII5_06240) ispG 642975..644081 (-) 1107 WP_050822779.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  K6J67_RS03255 (CHBNIII5_06250) - 644090..645001 (-) 912 WP_011961720.1 RodZ family helix-turn-helix domain-containing protein -
  K6J67_RS03260 (CHBNIII5_06260) pilF/pilF2 645073..645612 (-) 540 WP_005654843.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  K6J67_RS03265 (CHBNIII5_06270) - 645713..646864 (-) 1152 WP_005662659.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  K6J67_RS03270 (CHBNIII5_06280) - 647110..647988 (+) 879 WP_050822777.1 serine hydrolase -
  K6J67_RS03275 (CHBNIII5_06290) - 648080..648544 (-) 465 WP_048950241.1 hypothetical protein -
  K6J67_RS03280 (CHBNIII5_06300) - 648871..649731 (+) 861 WP_224056855.1 metal ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20586.20 Da        Isoelectric Point: 8.2626

>NTDB_id=71145 K6J67_RS03260 WP_005654843.1 645073..645612(-) (pilF/pilF2) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
MKTISKQLSAVIFPFIFSACVSQSASNLNHQAAAKARVELALSYLQQNNPQLAKINLDKALQHDKNYYLVHSALAHYYQQ
QGEIENAHREYEIAVNLNHKQGDVHNNFGTFLCSQKKFEQAQQQFELALNSPNYYHQADTFENIVLCAYSAQKMDIYQQT
LEKLRQIDGKRAEKFNSLK

Nucleotide


Download         Length: 540 bp        

>NTDB_id=71145 K6J67_RS03260 WP_005654843.1 645073..645612(-) (pilF/pilF2) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
ATGAAAACAATAAGTAAACAACTAAGTGCGGTTATTTTTCCTTTTATTTTTTCTGCCTGCGTTTCACAATCTGCATCTAA
CTTAAATCATCAAGCTGCCGCTAAAGCTCGTGTGGAACTCGCTTTGAGCTATCTTCAGCAAAATAATCCTCAACTGGCTA
AAATCAATTTAGACAAAGCACTTCAACACGATAAAAATTACTATCTCGTGCATTCAGCACTTGCACATTATTATCAACAA
CAAGGGGAAATAGAGAATGCACATCGTGAATATGAAATAGCCGTAAACCTTAATCATAAACAAGGCGATGTGCATAATAA
TTTTGGTACGTTTCTATGTAGTCAAAAGAAATTTGAACAAGCCCAGCAACAATTTGAATTAGCACTTAATTCGCCAAATT
ATTATCATCAAGCAGATACATTTGAAAATATCGTGCTTTGTGCTTATTCCGCGCAAAAAATGGATATTTATCAGCAAACT
TTAGAAAAATTACGTCAAATCGATGGAAAACGTGCGGAAAAATTCAATAGTCTAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PFD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

97.765

100

0.978
  pilF Glaesserella parasuis strain SC1401

44.693

100

0.447

Multiple sequence alignment