Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD2   Type   Regulator
Locus tag   POF63_RS09320 Genome accession   NZ_CP116708
Coordinates   1830862..1831161 (-) Length   99 a.a.
NCBI ID   WP_000002567.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain CNCTC 10/84 sCas9     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1825862..1836161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF63_RS09290 (POF63_09290) - 1826278..1826769 (-) 492 WP_000632641.1 PTS sugar transporter subunit IIB -
  POF63_RS09295 (POF63_09295) - 1826787..1827212 (-) 426 WP_000823125.1 PTS mannose transporter subunit IIA -
  POF63_RS09300 (POF63_09300) - 1827459..1828493 (-) 1035 WP_000369168.1 acyltransferase family protein -
  POF63_RS09305 (POF63_09305) - 1828545..1828727 (+) 183 WP_001866975.1 hypothetical protein -
  POF63_RS09310 (POF63_09310) - 1828722..1829885 (-) 1164 WP_000623429.1 ABC transporter permease subunit -
  POF63_RS09315 (POF63_09315) - 1829891..1830739 (-) 849 WP_000926586.1 ABC transporter ATP-binding protein -
  POF63_RS09320 (POF63_09320) comD/comD2 1830862..1831161 (-) 300 WP_000002567.1 GHKL domain-containing protein Regulator
  POF63_RS09325 (POF63_09325) comE/blpR 1831230..1831982 (-) 753 WP_001019932.1 response regulator transcription factor Regulator
  POF63_RS09330 (POF63_09330) - 1832259..1833074 (-) 816 WP_001029869.1 endonuclease/exonuclease/phosphatase family protein -
  POF63_RS09335 (POF63_09335) - 1833128..1835311 (-) 2184 WP_000795062.1 PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11343.79 Da        Isoelectric Point: 5.0958

>NTDB_id=711290 POF63_RS09320 WP_000002567.1 1830862..1831161(-) (comD/comD2) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
MANMIDYSHHIEVSLETDEPKIAMSYFTLNHKQIFIIENSIVEERIDASRLFGYGASSKGEDRGLGLYNVMKVIDRYPNA
SISTNSEQHTFRQGLEIIF

Nucleotide


Download         Length: 300 bp        

>NTDB_id=711290 POF63_RS09320 WP_000002567.1 1830862..1831161(-) (comD/comD2) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
TTGGCTAATATGATAGATTATAGCCACCATATTGAAGTTTCTTTAGAGACAGATGAACCTAAGATAGCCATGTCTTATTT
TACATTAAACCATAAGCAAATTTTTATCATAGAAAATTCGATAGTCGAGGAAAGAATAGATGCTTCACGTTTGTTTGGTT
ATGGAGCAAGTAGCAAGGGAGAAGATAGAGGGTTAGGCCTTTATAATGTCATGAAAGTTATTGACCGCTATCCCAATGCA
TCTATTAGTACAAATAGTGAACAACATACTTTCCGTCAGGGCTTAGAAATAATCTTTTAG

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(11-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD2 Streptococcus equinus JB1

40.86

93.939

0.384
  comD/comD3 Streptococcus equinus JB1

38.71

93.939

0.364