Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   K6J67_RS00270 Genome accession   NZ_AP018776
Coordinates   56662..57378 (-) Length   238 a.a.
NCBI ID   WP_014551003.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-5 isolate 13H30     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51662..62378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J67_RS00250 (CHBNIII5_00510) nrdR 51769..52218 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  K6J67_RS00255 (CHBNIII5_00520) recC 52273..55638 (-) 3366 WP_050822923.1 exodeoxyribonuclease V subunit gamma -
  K6J67_RS00260 (CHBNIII5_00530) comQ 55684..55971 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  K6J67_RS00265 (CHBNIII5_00540) comP 55964..56647 (-) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  K6J67_RS00270 (CHBNIII5_00550) comO 56662..57378 (-) 717 WP_014551003.1 type II secretion system protein J Machinery gene
  K6J67_RS00275 (CHBNIII5_00570) comN 57378..57890 (-) 513 WP_050822924.1 type II secretion system protein Machinery gene
  K6J67_RS00280 (CHBNIII5_00580) suhB 58090..58893 (+) 804 WP_014551005.1 inositol-1-monophosphatase -
  K6J67_RS00285 (CHBNIII5_00590) nrfE 59003..60910 (+) 1908 WP_014551006.1 heme lyase NrfEFG subunit NrfE -
  K6J67_RS00290 (CHBNIII5_00600) - 60910..61440 (+) 531 WP_014551007.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26766.10 Da        Isoelectric Point: 9.5507

>NTDB_id=71127 K6J67_RS00270 WP_014551003.1 56662..57378(-) (comO) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
MMKTLLKGQTLLALMISLTLSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=71127 K6J67_RS00270 WP_014551003.1 56662..57378(-) (comO) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGACTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACAAATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCCATTTTTATTAGCCAAGAAGATAATGCACCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGCTGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

98.319

100

0.983

Multiple sequence alignment