Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   K6J67_RS00275 Genome accession   NZ_AP018776
Coordinates   57378..57890 (-) Length   170 a.a.
NCBI ID   WP_050822924.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-5 isolate 13H30     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52378..62890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J67_RS00260 (CHBNIII5_00530) comQ 55684..55971 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  K6J67_RS00265 (CHBNIII5_00540) comP 55964..56647 (-) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  K6J67_RS00270 (CHBNIII5_00550) comO 56662..57378 (-) 717 WP_014551003.1 type II secretion system protein J Machinery gene
  K6J67_RS00275 (CHBNIII5_00570) comN 57378..57890 (-) 513 WP_050822924.1 type II secretion system protein Machinery gene
  K6J67_RS00280 (CHBNIII5_00580) suhB 58090..58893 (+) 804 WP_014551005.1 inositol-1-monophosphatase -
  K6J67_RS00285 (CHBNIII5_00590) nrfE 59003..60910 (+) 1908 WP_014551006.1 heme lyase NrfEFG subunit NrfE -
  K6J67_RS00290 (CHBNIII5_00600) - 60910..61440 (+) 531 WP_014551007.1 DsbE family thiol:disulfide interchange protein -
  K6J67_RS00295 (CHBNIII5_00610) nrfF 61437..62591 (+) 1155 WP_005686194.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19854.14 Da        Isoelectric Point: 8.7271

>NTDB_id=71128 K6J67_RS00275 WP_050822924.1 57378..57890(-) (comN) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
MQKGMTLVELLIGLAIISIVLSFVVPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYVHFYYPYFPNKTIIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQLDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=71128 K6J67_RS00275 WP_050822924.1 57378..57890(-) (comN) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
ATGCAAAAAGGTATGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGTGCTGAGTTTTGTCGTGCCATT
ATGGCAAACCGATTCACCTAAAACGATTTTAGCTAAAGAGCAACATCGCCTGTATTTATTTCTACGTCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGTGCATTTTTACTATCCTTA
TTTTCCTAATAAAACGATAATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTA
AAAACCAATCAATTGGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

95.294

100

0.953

Multiple sequence alignment