Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   POF63_RS04205 Genome accession   NZ_CP116708
Coordinates   767025..767621 (+) Length   198 a.a.
NCBI ID   WP_000966735.1    Uniprot ID   Q3K1U0
Organism   Streptococcus agalactiae strain CNCTC 10/84 sCas9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 762025..772621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF63_RS04185 (POF63_04185) - 762407..762565 (+) 159 WP_017648769.1 hypothetical protein -
  POF63_RS04190 (POF63_04190) - 763165..764088 (+) 924 WP_000447031.1 hypothetical protein -
  POF63_RS04195 (POF63_04195) - 764102..764653 (+) 552 WP_000427215.1 hypothetical protein -
  POF63_RS04200 (POF63_04200) pbp2b 764965..767010 (+) 2046 WP_000934669.1 penicillin-binding protein PBP2B -
  POF63_RS04205 (POF63_04205) recR 767025..767621 (+) 597 WP_000966735.1 recombination mediator RecR Machinery gene
  POF63_RS04210 (POF63_04210) - 767762..768808 (+) 1047 WP_000032510.1 D-alanine--D-alanine ligase -
  POF63_RS04215 (POF63_04215) murF 768955..770322 (+) 1368 WP_000777513.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  POF63_RS04220 (POF63_04220) - 770510..771730 (+) 1221 WP_000793489.1 OFA family MFS transporter -
  POF63_RS04225 (POF63_04225) - 771859..772545 (+) 687 WP_038406067.1 YwaF family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21619.82 Da        Isoelectric Point: 4.5632

>NTDB_id=711248 POF63_RS04205 WP_000966735.1 767025..767621(+) (recR) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
MLYPTPIAKLIDSFSKLPGIGTKTATRLAFYTIGMSDEDVNEFAKNLLAAKRELTYCSVCGNLTDDDPCLICTDKTRDQS
VILVVEDSKDVSAMEKIQEYNGLYHVLHGLISPMNGISPDDINLKSLITRLMDGQVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=711248 POF63_RS04205 WP_000966735.1 767025..767621(+) (recR) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
ATGCTTTACCCAACACCAATTGCTAAATTGATTGACAGCTTTTCAAAATTACCGGGTATAGGTACTAAAACAGCAACACG
TTTAGCTTTTTACACCATTGGTATGAGTGATGAAGATGTTAATGAATTTGCTAAGAATTTATTAGCTGCTAAGCGGGAAT
TAACCTATTGTTCTGTTTGTGGTAATTTGACTGATGATGATCCTTGCTTAATTTGTACAGATAAGACGCGTGACCAGTCT
GTTATCTTGGTTGTTGAAGATAGCAAAGATGTGTCAGCTATGGAAAAAATTCAAGAGTATAATGGTTTGTATCATGTCTT
ACATGGCTTAATTTCACCTATGAATGGTATTAGCCCTGATGACATTAATTTGAAAAGTTTAATTACTCGATTGATGGATG
GTCAGGTGACAGAAGTTATTGTTGCTACCAATGCAACTGCTGATGGTGAAGCTACATCAATGTATATTTCACGAGTCTTA
AAACCAGCTGGTATCAAAGTGACACGATTAGCGAGAGGTTTAGCTGTTGGTTCAGATATCGAATATGCAGATGAAGTAAC
CTTGCTTCGAGCAATCGAAAATCGTACAGAGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.667
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485