Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   NN994_RS08625 Genome accession   NZ_CP101646
Coordinates   1656627..1657583 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain UCCSt95     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1651627..1662583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NN994_RS08590 (NN994_08595) proC 1652186..1652956 (+) 771 WP_064355728.1 pyrroline-5-carboxylate reductase -
  NN994_RS08595 (NN994_08600) - 1652986..1653648 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  NN994_RS08600 (NN994_08605) - 1653745..1654188 (-) 444 WP_011681680.1 hypothetical protein -
  NN994_RS08605 (NN994_08610) - 1654262..1654600 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  NN994_RS08610 (NN994_08615) - 1654644..1654919 (-) 276 WP_011681681.1 hypothetical protein -
  NN994_RS08615 (NN994_08620) - 1654931..1655129 (-) 199 Protein_1636 helix-turn-helix transcriptional regulator -
  NN994_RS08620 (NN994_08625) - 1655378..1656571 (-) 1194 WP_014608740.1 acetate kinase -
  NN994_RS08625 (NN994_08630) comYH 1656627..1657583 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  NN994_RS08630 (NN994_08635) comGG 1657628..1657945 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  NN994_RS08635 (NN994_08640) comYF 1657923..1658360 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  NN994_RS08640 (NN994_08645) comGE 1658344..1658637 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  NN994_RS08645 (NN994_08650) comYD 1658609..1659037 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  NN994_RS08650 (NN994_08655) comYC 1658997..1659323 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  NN994_RS08655 (NN994_08660) comYB 1659320..1660420 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  NN994_RS08660 (NN994_08665) comGA/cglA/cilD 1660302..1661243 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  NN994_RS08665 (NN994_08670) - 1661324..1661686 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=711238 NN994_RS08625 WP_011226622.1 1656627..1657583(-) (comYH) [Streptococcus thermophilus strain UCCSt95]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=711238 NN994_RS08625 WP_011226622.1 1656627..1657583(-) (comYH) [Streptococcus thermophilus strain UCCSt95]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682