Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   NON14_RS05950 Genome accession   NZ_CP101642
Coordinates   1183395..1185566 (+) Length   723 a.a.
NCBI ID   WP_231953420.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HRB10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1178395..1190566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS05915 (NON14_05900) - 1178458..1179546 (+) 1089 WP_409043001.1 CAP-associated domain-containing protein -
  NON14_RS05920 (NON14_05905) - 1179570..1179860 (+) 291 WP_011374775.1 YlbG family protein -
  NON14_RS05925 (NON14_05910) rsmD 1179865..1180419 (+) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NON14_RS05930 (NON14_05915) coaD 1180432..1180929 (+) 498 WP_011374773.1 pantetheine-phosphate adenylyltransferase -
  NON14_RS05935 (NON14_05920) - 1180931..1181977 (+) 1047 WP_011374772.1 SepM family pheromone-processing serine protease -
  NON14_RS05940 (NON14_05925) comEA 1182049..1182756 (+) 708 WP_231952379.1 helix-hairpin-helix domain-containing protein Machinery gene
  NON14_RS05945 (NON14_05930) - 1182814..1183302 (+) 489 WP_011374770.1 ComE operon protein 2 -
  NON14_RS05950 (NON14_05935) comEC 1183395..1185566 (+) 2172 WP_231953420.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NON14_RS05955 (NON14_05940) holA 1185563..1186591 (+) 1029 WP_011374768.1 DNA polymerase III subunit delta -
  NON14_RS05960 (NON14_05945) rpsT 1186660..1186914 (-) 255 WP_011374767.1 30S ribosomal protein S20 -
  NON14_RS05965 (NON14_05950) rpsO 1187193..1187462 (+) 270 WP_011374766.1 30S ribosomal protein S15 -
  NON14_RS05970 (NON14_05955) - 1187691..1189409 (+) 1719 WP_011374765.1 ribonuclease J -
  NON14_RS05975 (NON14_05960) - 1189498..1190445 (+) 948 WP_409043006.1 hypothetical protein -

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 81742.78 Da        Isoelectric Point: 10.0984

>NTDB_id=711143 NON14_RS05950 WP_231953420.1 1183395..1185566(+) (comEC) [Latilactobacillus sakei strain HRB10]
MAFVKLISLRQTQITIMTIGLCLVYGGRFWISYHSVTQPQQPVAQYFKVQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRC
QTFAEKRRWQQVRHPVLFYGEKDFKRIQGATNQNEFDYARFLAQQKRCFYQLTLAKKTTFALRRPSSGLDWLHYWRQTCA
LYLRKLPTALRFHAQTLLLGLREAQVDHYQVVLGHLGIIHLLSLSGLHVFYLVQVIRWCATYCRIPREWLNCMLFGLLPV
YALLVGGTTSISRAIALILSRLLCKQLGIRQSRLDSWSLVLLVNLFWQPYLLHSMGGILSYLMAFALIYIGEGSTFKVAY
WLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPIVLGLVIVASVMLPVSNLVVNGCEWLLQLIYKGLGLVVQIPHAMIT
FGKIPLLPLLLIVTVSLLLIDGQAISNQWRKRLKRTLVSLYLASFLAIHFNPTGRVVMFDIGQGDSLLIQTPFNRHQLLI
DTGGRLALPQAAWQRRAQVSRAEKVTVNYLYSQGVDHIDAVALSHQDADHIGDLNQILKQIRVDRIICAAGLPQNRQFQR
QIRPFLATVQIEPYLAGAAFKVGSQKFNVLAPTKPGKGENSDSLVLQAQIGGASWLFTGDLEQEGERAIIERYPQLTVDY
LKVGHHGSKTASDPTVIKKLHLKGALISTGRENRYGHPHQETLTTLQAAKVPYWLTAQQGMLTWAYGPGQSEKLQTTIKD
SEK

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=711143 NON14_RS05950 WP_231953420.1 1183395..1185566(+) (comEC) [Latilactobacillus sakei strain HRB10]
TTGGCTTTTGTCAAATTAATAAGTCTCAGACAAACTCAGATAACGATTATGACGATCGGCTTATGCCTTGTTTACGGGGG
CCGCTTTTGGATAAGCTATCATAGTGTGACGCAACCGCAACAACCGGTAGCACAGTACTTTAAAGTGCAACCCGATGCGA
TTCAAGTAGCGGGCGATAGTGTCCAATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTAAGGCTTATTATCGCTGC
CAAACGTTCGCCGAGAAGCGGCGATGGCAGCAAGTACGACACCCCGTTTTGTTCTATGGGGAAAAAGATTTTAAACGTAT
ACAGGGTGCTACCAATCAAAATGAGTTTGATTATGCCCGTTTTTTAGCGCAACAGAAGCGCTGCTTTTACCAACTGACGT
TAGCCAAAAAAACAACTTTTGCGCTGAGACGCCCTAGTAGCGGTTTGGATTGGCTACATTATTGGCGCCAAACGTGTGCA
CTGTATTTACGTAAGTTACCAACAGCACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGCGGGAAGCGCAAGTTGA
CCATTACCAGGTTGTTTTGGGCCACTTAGGGATTATTCATCTCTTAAGTCTATCAGGGTTGCACGTGTTTTATTTAGTGC
AAGTCATTCGGTGGTGTGCGACTTATTGCCGCATACCGCGTGAGTGGTTAAACTGTATGTTATTTGGGCTATTGCCGGTA
TATGCCTTACTGGTTGGTGGTACGACAAGCATTAGTCGCGCGATTGCGCTTATTTTATCCCGGTTACTTTGCAAACAGTT
GGGCATTCGGCAATCAAGGTTAGATAGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAGCCTTATTTGCTACATA
GTATGGGCGGGATTTTAAGTTATTTGATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCACTTTTAAAGTTGCTTAC
TGGCTAAGTTTATTGAGTTTGCCGGTTTGCTTACGCTTTAATTATCGCTGGCATGTGCTGACGATAATGATGAATGCCTT
GGTAACGCCTATCTATCTGCCAATTGTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCTGTTAGCAATCTAGTGG
TTAACGGATGTGAGTGGCTGTTACAGTTGATTTACAAAGGCTTAGGACTAGTTGTTCAAATTCCCCATGCGATGATTACG
TTTGGTAAAATACCATTATTACCGTTACTATTGATTGTGACGGTCAGTCTCTTGTTAATCGATGGCCAGGCAATTAGTAA
TCAATGGCGTAAACGGCTGAAACGCACATTGGTAAGTTTGTATCTGGCTAGTTTTTTGGCGATTCATTTTAATCCGACTG
GTCGGGTGGTCATGTTTGATATTGGTCAAGGTGATAGTCTGTTGATTCAGACGCCGTTTAACCGGCATCAGCTTTTAATC
GATACTGGTGGTCGCCTAGCGCTACCGCAAGCAGCTTGGCAACGGCGGGCGCAGGTTTCACGAGCGGAAAAAGTAACGGT
TAATTATCTCTATAGCCAAGGAGTAGATCACATTGATGCGGTGGCACTTTCTCATCAGGATGCCGATCATATTGGTGATT
TGAACCAGATTTTAAAACAAATTCGTGTTGATCGAATCATTTGTGCTGCCGGATTACCGCAAAATCGGCAATTTCAAAGA
CAAATTCGACCATTTTTAGCAACGGTTCAGATAGAACCCTATTTAGCCGGGGCCGCTTTTAAAGTGGGATCGCAAAAATT
TAACGTCTTAGCACCGACTAAGCCGGGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGCACAAATTGGTGGGGCTA
GCTGGCTTTTTACAGGAGATCTAGAACAAGAAGGTGAACGGGCAATTATCGAGCGGTATCCACAATTAACCGTCGATTAT
TTAAAAGTTGGCCATCATGGTAGTAAAACGGCTAGTGACCCCACCGTGATTAAAAAATTGCACTTAAAAGGCGCATTAAT
CTCAACCGGCAGAGAGAATCGTTATGGTCATCCGCACCAGGAAACTTTGACGACTTTGCAAGCGGCCAAAGTGCCTTATT
GGCTAACGGCGCAGCAGGGGATGTTGACCTGGGCGTACGGTCCCGGTCAAAGCGAAAAACTGCAAACAACAATAAAGGAT
AGTGAAAAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(462-670)

Competence protein (Competence)

(177-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

99.585

100

0.996