Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NN913_RS17095 Genome accession   NZ_CP101621
Coordinates   3433049..3434434 (-) Length   461 a.a.
NCBI ID   WP_069449043.1    Uniprot ID   -
Organism   Bacillus velezensis strain 906     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3428049..3439434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NN913_RS17060 (NN913_17015) flgL 3428224..3429141 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  NN913_RS17065 (NN913_17020) flgK 3429153..3430670 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  NN913_RS17070 (NN913_17025) - 3430686..3431168 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NN913_RS17075 (NN913_17030) flgM 3431183..3431449 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NN913_RS17080 (NN913_17035) - 3431519..3431938 (-) 420 WP_255764045.1 TIGR03826 family flagellar region protein -
  NN913_RS17085 (NN913_17040) comFC 3432012..3432701 (-) 690 WP_255764356.1 phosphoribosyltransferase family protein Machinery gene
  NN913_RS17090 (NN913_17045) - 3432707..3432991 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  NN913_RS17095 (NN913_17050) comFA 3433049..3434434 (-) 1386 WP_069449043.1 DEAD/DEAH box helicase Machinery gene
  NN913_RS17100 (NN913_17055) - 3434542..3435390 (-) 849 WP_003151387.1 DegV family protein -
  NN913_RS17105 (NN913_17060) degU 3435488..3436177 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NN913_RS17110 (NN913_17065) degS 3436254..3437417 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  NN913_RS17115 (NN913_17070) - 3437640..3438287 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52453.83 Da        Isoelectric Point: 10.1460

>NTDB_id=711044 NN913_RS17095 WP_069449043.1 3433049..3434434(-) (comFA) [Bacillus velezensis strain 906]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWGPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALIYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPHFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=711044 NN913_RS17095 WP_069449043.1 3433049..3434434(-) (comFA) [Bacillus velezensis strain 906]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGGGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTATTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTGCCGG
AGCCGCATTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625