Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NN913_RS17085 Genome accession   NZ_CP101621
Coordinates   3432012..3432701 (-) Length   229 a.a.
NCBI ID   WP_255764356.1    Uniprot ID   -
Organism   Bacillus velezensis strain 906     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3427012..3437701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NN913_RS17050 (NN913_17005) fliW 3427103..3427534 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  NN913_RS17055 (NN913_17010) - 3427564..3428133 (-) 570 WP_003151397.1 DUF6470 family protein -
  NN913_RS17060 (NN913_17015) flgL 3428224..3429141 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  NN913_RS17065 (NN913_17020) flgK 3429153..3430670 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  NN913_RS17070 (NN913_17025) - 3430686..3431168 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NN913_RS17075 (NN913_17030) flgM 3431183..3431449 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NN913_RS17080 (NN913_17035) - 3431519..3431938 (-) 420 WP_255764045.1 TIGR03826 family flagellar region protein -
  NN913_RS17085 (NN913_17040) comFC 3432012..3432701 (-) 690 WP_255764356.1 phosphoribosyltransferase family protein Machinery gene
  NN913_RS17090 (NN913_17045) - 3432707..3432991 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  NN913_RS17095 (NN913_17050) comFA 3433049..3434434 (-) 1386 WP_069449043.1 DEAD/DEAH box helicase Machinery gene
  NN913_RS17100 (NN913_17055) - 3434542..3435390 (-) 849 WP_003151387.1 DegV family protein -
  NN913_RS17105 (NN913_17060) degU 3435488..3436177 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NN913_RS17110 (NN913_17065) degS 3436254..3437417 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25331.97 Da        Isoelectric Point: 8.2933

>NTDB_id=711043 NN913_RS17085 WP_255764356.1 3432012..3432701(-) (comFC) [Bacillus velezensis strain 906]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCADRESKTERRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=711043 NN913_RS17085 WP_255764356.1 3432012..3432701(-) (comFC) [Bacillus velezensis strain 906]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGACCGGGAATCAAAAACGGAAAGGCGCTTTTTGCTACGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603