Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD2   Type   Regulator
Locus tag   POF60_RS09330 Genome accession   NZ_CP116705
Coordinates   1830436..1830735 (-) Length   99 a.a.
NCBI ID   WP_000002567.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain CNCTC 10/84 dCas9     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1825436..1835735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF60_RS09300 (POF60_09300) - 1825852..1826343 (-) 492 WP_000632641.1 PTS sugar transporter subunit IIB -
  POF60_RS09305 (POF60_09305) - 1826361..1826786 (-) 426 WP_000823125.1 PTS mannose transporter subunit IIA -
  POF60_RS09310 (POF60_09310) - 1827033..1828067 (-) 1035 WP_000369168.1 acyltransferase family protein -
  POF60_RS09315 (POF60_09315) - 1828119..1828301 (+) 183 WP_001866975.1 hypothetical protein -
  POF60_RS09320 (POF60_09320) - 1828296..1829459 (-) 1164 WP_000623429.1 ABC transporter permease subunit -
  POF60_RS09325 (POF60_09325) - 1829465..1830313 (-) 849 WP_000926586.1 ABC transporter ATP-binding protein -
  POF60_RS09330 (POF60_09330) comD/comD2 1830436..1830735 (-) 300 WP_000002567.1 GHKL domain-containing protein Regulator
  POF60_RS09335 (POF60_09335) comE/blpR 1830804..1831556 (-) 753 WP_001019932.1 response regulator transcription factor Regulator
  POF60_RS09340 (POF60_09340) - 1831833..1832648 (-) 816 WP_001029869.1 endonuclease/exonuclease/phosphatase family protein -
  POF60_RS09345 (POF60_09345) - 1832702..1834885 (-) 2184 WP_000795062.1 PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11343.79 Da        Isoelectric Point: 5.0958

>NTDB_id=710965 POF60_RS09330 WP_000002567.1 1830436..1830735(-) (comD/comD2) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
MANMIDYSHHIEVSLETDEPKIAMSYFTLNHKQIFIIENSIVEERIDASRLFGYGASSKGEDRGLGLYNVMKVIDRYPNA
SISTNSEQHTFRQGLEIIF

Nucleotide


Download         Length: 300 bp        

>NTDB_id=710965 POF60_RS09330 WP_000002567.1 1830436..1830735(-) (comD/comD2) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
TTGGCTAATATGATAGATTATAGCCACCATATTGAAGTTTCTTTAGAGACAGATGAACCTAAGATAGCCATGTCTTATTT
TACATTAAACCATAAGCAAATTTTTATCATAGAAAATTCGATAGTCGAGGAAAGAATAGATGCTTCACGTTTGTTTGGTT
ATGGAGCAAGTAGCAAGGGAGAAGATAGAGGGTTAGGCCTTTATAATGTCATGAAAGTTATTGACCGCTATCCCAATGCA
TCTATTAGTACAAATAGTGAACAACATACTTTCCGTCAGGGCTTAGAAATAATCTTTTAG

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(11-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD2 Streptococcus equinus JB1

40.86

93.939

0.384
  comD/comD3 Streptococcus equinus JB1

38.71

93.939

0.364