Detailed information    

insolico Bioinformatically predicted

Overview


Name   addA   Type   Machinery gene
Locus tag   NNG64_RS12005 Genome accession   NZ_CP101610
Coordinates   2463765..2467469 (-) Length   1234 a.a.
NCBI ID   WP_060965056.1    Uniprot ID   A0AAI8HSI3
Organism   Bacillus siamensis strain WYJ-E14     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2458765..2472469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS11990 (NNG64_11965) - 2458831..2459124 (-) 294 WP_017417418.1 hypothetical protein -
  NNG64_RS11995 (NNG64_11970) sbcC 2459140..2462532 (-) 3393 WP_060963122.1 exonuclease subunit SbcC -
  NNG64_RS12000 (NNG64_11975) sbcD 2462529..2463701 (-) 1173 WP_047476740.1 exonuclease subunit SbcD -
  NNG64_RS12005 (NNG64_11980) addA 2463765..2467469 (-) 3705 WP_060965056.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  NNG64_RS12010 (NNG64_11985) addB 2467456..2470956 (-) 3501 WP_060963123.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  NNG64_RS12015 (NNG64_11990) - 2471101..2471811 (+) 711 WP_060963124.1 DUF421 domain-containing protein -
  NNG64_RS12020 (NNG64_11995) - 2471880..2472389 (+) 510 WP_060963125.1 ferritin-like domain-containing protein -

Sequence


Protein


Download         Length: 1234 a.a.        Molecular weight: 141236.57 Da        Isoelectric Point: 5.2194

>NTDB_id=710870 NNG64_RS12005 WP_060965056.1 2463765..2467469(-) (addA) [Bacillus siamensis strain WYJ-E14]
MQIPKPKDSIWTDDQWSAIVSSGRDILVAAAAGSGKTAVLVERMIRKITADEDPVDVDRLLVVTFTNASAAEMKHRIAEA
LEKELAKNPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYMIDLDPGFRMADQTEGELLGDEVLDELFEDEYAKGNQA
FFELVDRYTTDRHDLDLQDLVKRVYEYSRSHPDPEAWLKSFVRLYDVTEESKMEELPFYEYVREDAEMALFGAKQKLEKA
LELTKAPGGPAPRADHFLDDLQQIEELISCRHDFEALYERVPAVTFKRAKAVKGDEFDKALLDEATDLRNGAKKLIEKLK
TDYFTRSPQDHVKSLTDMKPVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAADEDGRRVPSEAAVYYQEQ
FHEVLVDEYQDTNLVQESILQLVKSGNEEAGNLFMVGDVKQSIYRFRLAEPLLFLGKYKRFTESGEGAGQKVDLNQNFRS
RSDILDSTNFLFKQLMGGKIGEVDYDEQAALKLGASYPPNDAAKTELLLIDSADGADSSEDAEDFETVHWEAKAIAGEIR
KLVSSPFKVYDGKTKTHRNIQYRDIVILLRSMPWAPQLMEELKNQGIPVYANLTSGYFEAVEVAAALSVLKVIDNPYQDI
PLASVLRSPIVGCDENELALIRLEKKKAPFYEALKAYIANGDRHDELYQKLRTFYDHLQKWRSFSTNHSVAELIWEVYRD
TGYFDYAGGMPGGKQRQANLRVLYDRARSYEATAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLE
FPVVFTAGLGRSFNMMDLNKSYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKMRRELLSEELRVLYVALTRAKEKLFL
IGSCKNREKQLAKWQAQADRADWLLSEFDRYQAASYLDFIGPALIRHRDMEAHRPPGLSAPEDIAHDPSRFHIRMLQQSE
LLEDNPKERAEEKSKRLKAIQQGEPIPDSFSFDDQARRLLEWEYPYRELTAIRTKQSVSELKRKQEYEDEYSGRSLIKPS
GDTLLYRRPGFMMKKGLTAAEKGTAMHTVMQHIPLTHVPTAEEAERTVQTLHEKELLTEEQRDAIDIEDIIQFFETEIGK
DLLGARRIDREVPFSMALPAGEVYKDAETAGEPLLVQGIIDCLYETADGLYLLDYKTDRIEGKFRNGFEGAAPILQKRYE
TQIELYTKAIEQITKTKVKGRALYFFDGGHVLTL

Nucleotide


Download         Length: 3705 bp        

>NTDB_id=710870 NNG64_RS12005 WP_060965056.1 2463765..2467469(-) (addA) [Bacillus siamensis strain WYJ-E14]
ATGCAAATTCCTAAACCGAAAGACAGCATATGGACGGATGACCAATGGAGCGCCATCGTTTCTTCCGGCCGCGATATTCT
GGTCGCTGCCGCAGCCGGATCAGGTAAAACGGCCGTGCTCGTGGAACGGATGATCAGAAAGATAACCGCGGATGAAGATC
CGGTTGATGTTGACAGGCTCCTTGTGGTGACCTTTACAAACGCCTCAGCAGCGGAAATGAAGCATCGGATCGCTGAAGCA
TTAGAAAAAGAGCTCGCCAAAAATCCGGGATCTCTCCATATCAGACGGCAGCTCTCTCTATTAAATCGGGCGAGCATTTC
GACGCTGCACTCTTTCTGTCTGCAGGTGCTTAAAAAATATTATTATATGATTGATCTTGACCCGGGCTTTCGGATGGCTG
ACCAGACGGAAGGCGAATTGCTCGGAGACGAAGTCCTTGATGAGCTGTTTGAGGATGAATACGCAAAAGGGAATCAAGCG
TTTTTTGAGCTTGTGGACAGATATACGACGGACAGGCATGATTTGGATCTTCAAGATCTCGTCAAGCGGGTGTACGAGTA
TTCACGGTCTCATCCTGATCCGGAAGCGTGGCTGAAAAGCTTTGTCCGCCTATATGATGTGACGGAAGAAAGCAAAATGG
AAGAGCTGCCGTTTTACGAGTATGTGAGAGAAGATGCTGAAATGGCGCTCTTCGGGGCAAAGCAAAAGCTTGAAAAGGCG
CTTGAACTGACAAAAGCGCCCGGCGGGCCGGCGCCGCGCGCTGATCATTTTTTGGATGATCTTCAGCAGATAGAAGAGCT
GATCAGCTGCCGGCATGACTTTGAGGCGCTGTATGAACGGGTTCCCGCGGTCACATTTAAGCGGGCTAAGGCGGTAAAAG
GTGATGAATTTGACAAGGCGCTTTTGGATGAAGCGACCGATTTGCGAAACGGCGCGAAAAAACTGATCGAAAAGTTAAAG
ACCGATTACTTTACAAGAAGCCCGCAAGATCATGTAAAGAGTTTAACAGACATGAAGCCTGTCATTGAAACGCTCGTTCA
GCTCGTGATATCGTACGGAAAACGATTTGAAGCGGCGAAACAAGAAAAATCAATCATTGATTTCTCAGATTTGGAACATT
ACTGTCTGGCGATTTTAACTGCGGCTGATGAAGACGGCCGGCGGGTGCCGAGTGAAGCGGCCGTTTATTATCAAGAGCAG
TTCCATGAGGTTCTGGTTGATGAATATCAAGATACCAATCTTGTACAGGAATCTATTCTGCAGCTTGTGAAAAGCGGGAA
TGAAGAGGCGGGAAATCTGTTTATGGTAGGCGATGTCAAACAATCGATCTACCGATTCAGACTTGCCGAGCCGCTGCTGT
TTCTCGGGAAATATAAAAGGTTTACAGAAAGCGGGGAAGGCGCGGGACAGAAAGTTGACCTGAACCAAAACTTCCGCAGC
CGCTCCGATATTTTGGACAGTACGAATTTCTTGTTTAAGCAGCTGATGGGCGGCAAAATCGGCGAAGTGGACTACGATGA
ACAGGCGGCATTGAAACTCGGTGCGTCGTATCCGCCGAATGACGCGGCAAAAACGGAACTGCTGCTCATTGACAGCGCTG
ATGGCGCAGACAGCTCCGAGGATGCCGAAGACTTTGAAACTGTGCACTGGGAAGCGAAAGCGATAGCCGGGGAGATCCGA
AAGCTTGTCTCATCTCCGTTTAAGGTATATGACGGCAAAACAAAAACACACCGGAATATCCAGTACCGGGATATCGTAAT
TTTGCTGCGTTCCATGCCTTGGGCGCCGCAATTGATGGAAGAACTGAAAAACCAGGGCATTCCGGTTTACGCCAATTTGA
CGTCGGGTTATTTTGAAGCCGTGGAGGTGGCTGCGGCGCTTTCGGTCTTAAAGGTGATTGACAACCCGTATCAGGATATT
CCGCTTGCTTCCGTATTGCGCTCGCCCATTGTCGGCTGTGACGAAAATGAACTTGCGCTGATACGACTGGAAAAGAAAAA
AGCGCCGTTTTATGAAGCGCTGAAAGCATATATAGCGAACGGTGACAGACATGATGAGCTGTATCAAAAGCTGAGAACAT
TTTATGACCATCTGCAAAAGTGGCGGTCATTCTCGACGAATCATTCGGTAGCTGAGCTGATTTGGGAAGTATACCGCGAT
ACCGGGTATTTTGATTATGCAGGCGGCATGCCTGGCGGAAAGCAGCGCCAGGCCAATCTGCGCGTCTTGTATGACCGGGC
GCGCTCGTACGAAGCGACGGCGTTCCGCGGGTTATTCCGCTTTTTGCGGTTCATTGAACGGATGCAGGAGCGCGGCGATG
ATCTGGGGACGGCGCGGGCGCTCAGCGAGCAGGAGGATGTCGTGCGGCTGATGACGATCCACAGCAGCAAAGGACTTGAA
TTCCCCGTCGTTTTCACTGCCGGACTCGGCAGAAGTTTTAATATGATGGATCTCAACAAATCATATCTGCTTGATAAAGA
GCTCGGTTTCGGAACGAAGTATATTCATCCGGAACTCAGAATCAGCTATCCGACTCTGCCGCTTGTGGCGATGAAGAAAA
AAATGCGCAGAGAGCTTTTATCAGAAGAATTGCGCGTGTTATATGTGGCGCTGACAAGAGCGAAGGAAAAGCTGTTTCTC
ATCGGTTCCTGCAAAAACCGGGAAAAACAGCTGGCTAAATGGCAGGCGCAAGCGGACAGGGCCGACTGGCTTCTCTCTGA
ATTCGACCGCTATCAGGCGGCATCTTATTTGGACTTTATCGGGCCGGCGCTTATCCGCCACCGTGACATGGAGGCGCACA
GGCCGCCGGGTCTTTCGGCTCCGGAGGATATCGCGCACGACCCGTCCCGTTTTCATATCCGGATGCTGCAGCAAAGTGAA
CTGCTGGAAGATAACCCAAAAGAACGTGCTGAAGAAAAGAGCAAACGTCTCAAGGCGATTCAGCAGGGCGAGCCGATTCC
TGATTCGTTTTCATTTGATGATCAGGCGCGCCGTCTCCTTGAATGGGAATACCCGTACCGAGAGCTGACGGCTATCAGAA
CGAAGCAGTCAGTTTCTGAGCTGAAGAGAAAGCAAGAATACGAGGATGAATACAGCGGCCGCTCTCTCATCAAACCGTCA
GGGGACACGCTTTTATACAGGCGTCCCGGTTTTATGATGAAAAAAGGGCTGACAGCCGCCGAAAAAGGGACGGCGATGCA
TACGGTGATGCAGCATATACCGCTGACGCACGTTCCGACTGCCGAAGAAGCGGAGCGGACGGTTCAGACGCTTCACGAAA
AAGAGCTGCTGACAGAAGAACAGCGGGACGCTATTGATATCGAAGACATTATACAGTTTTTCGAAACTGAAATCGGGAAA
GATCTTCTCGGGGCGCGGCGGATTGATCGGGAGGTGCCGTTCAGTATGGCGCTTCCGGCCGGCGAGGTGTACAAGGATGC
CGAAACGGCCGGTGAACCGCTGCTCGTGCAGGGGATTATTGACTGCCTCTACGAAACGGCGGACGGACTCTATTTGCTGG
ACTATAAAACAGATCGGATAGAGGGGAAATTCCGGAACGGATTTGAAGGCGCGGCCCCGATCCTGCAAAAAAGGTATGAA
ACACAAATCGAATTGTATACAAAAGCGATTGAACAAATTACAAAAACGAAAGTGAAAGGGCGTGCGCTCTATTTCTTCGA
TGGAGGTCACGTTCTTACACTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addA Bacillus subtilis subsp. subtilis str. 168

82.334

100

0.823