Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NNG64_RS09260 Genome accession   NZ_CP101610
Coordinates   1907615..1908514 (-) Length   299 a.a.
NCBI ID   WP_060962800.1    Uniprot ID   A0AAI8HPH4
Organism   Bacillus siamensis strain WYJ-E14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1902615..1913514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS09245 (NNG64_09225) xerC 1902999..1903916 (-) 918 WP_060962798.1 tyrosine recombinase XerC -
  NNG64_RS09250 (NNG64_09230) trmFO 1903986..1905293 (-) 1308 WP_016936130.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NNG64_RS09255 (NNG64_09235) topA 1905358..1907433 (-) 2076 WP_060962799.1 type I DNA topoisomerase -
  NNG64_RS09260 (NNG64_09240) dprA 1907615..1908514 (-) 900 WP_060962800.1 DNA-processing protein DprA Machinery gene
  NNG64_RS09265 (NNG64_09245) sucD 1908582..1909484 (-) 903 WP_060962801.1 succinate--CoA ligase subunit alpha -
  NNG64_RS09270 (NNG64_09250) sucC 1909513..1910670 (-) 1158 WP_016936134.1 ADP-forming succinate--CoA ligase subunit beta -
  NNG64_RS09275 (NNG64_09255) - 1910845..1911126 (-) 282 WP_060962802.1 FlhB-like flagellar biosynthesis protein -
  NNG64_RS09280 (NNG64_09260) - 1911123..1912826 (-) 1704 WP_060962803.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32994.22 Da        Isoelectric Point: 8.7529

>NTDB_id=710858 NNG64_RS09260 WP_060962800.1 1907615..1908514(-) (dprA) [Bacillus siamensis strain WYJ-E14]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLRDPHPLTVLSEGKTAPKAIFREIERKDPELDEVLSEYRREGITVI
PISSSRYPSWLKTIYDPPVVLFAKGNTQLLEKGRKIGIVGTRKPTEDGIKAVGHLTAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=710858 NNG64_RS09260 WP_060962800.1 1907615..1908514(-) (dprA) [Bacillus siamensis strain WYJ-E14]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATCAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCCCTGTCTTTTTTACGGGACCCGCATCCATTAACCGTTTTGTCAGAAGGAAAAACAGCTCCGAAAGCCA
TTTTTCGAGAAATAGAGCGCAAGGATCCGGAACTCGATGAAGTTCTGTCCGAATACCGCCGCGAAGGCATTACTGTCATC
CCGATTTCATCAAGCCGCTATCCTTCATGGCTTAAAACGATTTATGATCCGCCCGTCGTCTTGTTTGCAAAAGGGAACAC
GCAGCTTCTTGAAAAAGGCCGAAAAATTGGTATTGTGGGCACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTACCGCCGAACTCTCAAAAAAAGGCTGGGTCATCGTAAGCGGGCTTGCATCCGGCATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATTTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCACCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAGTGGCACTTTC
CGATGAGAAACCGTATAATCAGCGGATTAAGTGAAGGAATTGTAGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGGAGAGAGGTATTTGCCGTTCCCGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTGTGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.237

100

0.712
  dprA Lactococcus lactis subsp. cremoris KW2

41.577

93.311

0.388
  dprA Streptococcus mutans UA159

43.346

87.96

0.381