Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   G6M09_RS04990 Genome accession   NZ_CP116700
Coordinates   1010961..1011683 (-) Length   240 a.a.
NCBI ID   WP_003512859.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain A47a     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1005961..1016683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6M09_RS04980 (G6M09_004980) - 1007387..1009822 (+) 2436 WP_065704626.1 ComEC/Rec2 family competence protein -
  G6M09_RS04985 (G6M09_004985) - 1009839..1010522 (-) 684 WP_065704624.1 glutathione S-transferase family protein -
  G6M09_RS04990 (G6M09_004990) dinR/lexA 1010961..1011683 (-) 723 WP_003512859.1 transcriptional repressor LexA Regulator
  G6M09_RS04995 (G6M09_004995) - 1011894..1012775 (+) 882 WP_065704622.1 VOC family protein -
  G6M09_RS05000 (G6M09_005000) kdsA 1012775..1013620 (+) 846 WP_065704620.1 3-deoxy-8-phosphooctulonate synthase -
  G6M09_RS05005 (G6M09_005005) eno 1013768..1015042 (+) 1275 WP_003512870.1 phosphopyruvate hydratase -
  G6M09_RS05010 (G6M09_005010) - 1015277..1015594 (+) 318 WP_003512872.1 FtsB family cell division protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25998.93 Da        Isoelectric Point: 9.3311

>NTDB_id=710852 G6M09_RS04990 WP_003512859.1 1010961..1011683(-) (dinR/lexA) [Agrobacterium tumefaciens strain A47a]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSVIEGSLGKPKTPEPAPAPKTPANDLGGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGTGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=710852 G6M09_RS04990 WP_003512859.1 1010961..1011683(-) (dinR/lexA) [Agrobacterium tumefaciens strain A47a]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCCTCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCTTCGAAATCCGGCATCCACCGCCTGATAACCGCTCTCGAAGAGCGCGGGTTCA
TTCGTCGGCTACCGAATAGAGCTCGGGCGCTGGAAGTCATCAAGCTGCCCGAGGCTTATACGCCGGGCGCAAGGCCGCAG
CGCGGCTTTTCGCCAAGCGTTATCGAAGGCAGCCTTGGCAAACCCAAAACGCCGGAACCGGCCCCTGCCCCCAAGACGCC
GGCCAACGATCTGGGCGGGGCTGTCACCGTGCCGGTCATGGGCCGCATCGCTGCGGGCGTGCCGATTTCCGCCATTCAGA
ACAACACCCATGATGTGGCCGTGCCAGTAGACATGCTTGGCACGGGCGAACATTACGCTCTTGAGGTCAAGGGTGATTCG
ATGATCGAGGCCGGCATTTTCGACGGCGACACAGTCATCATCCGCAACGGCAACACCGCCAATCCCGGGGATATCGTTGT
GGCTCTGGTGGATGACGAGGAAGCCACGCTGAAGCGCTTCCGCCGCAAGGGTGCCTCCATTGCGCTCGAGGCGGCAAACC
CAGCCTATGAGACCCGTATTTTCGGGCCCGACCGGGTGAAAATTCAGGGCAAGCTGGTGGGGCTGATCCGCCGCTACCAT
TGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(118-233)

LexA DNA binding domain (LexA_DNA_bind)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363