Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NNG64_RS05925 Genome accession   NZ_CP101610
Coordinates   1114568..1116298 (+) Length   576 a.a.
NCBI ID   WP_060964790.1    Uniprot ID   A0AAI8MY76
Organism   Bacillus siamensis strain WYJ-E14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1109568..1121298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS05900 (NNG64_05890) - 1109970..1110224 (+) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -
  NNG64_RS05905 (NNG64_05895) - 1110214..1111104 (+) 891 WP_060964787.1 polyprenyl synthetase family protein -
  NNG64_RS05910 (NNG64_05900) dxs 1111247..1113148 (+) 1902 WP_060964788.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NNG64_RS05915 (NNG64_05905) - 1113145..1113990 (+) 846 WP_060964789.1 TlyA family RNA methyltransferase -
  NNG64_RS05920 (NNG64_05910) argR 1114087..1114536 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  NNG64_RS05925 (NNG64_05915) recN 1114568..1116298 (+) 1731 WP_060964790.1 DNA repair protein RecN Machinery gene
  NNG64_RS05930 (NNG64_05920) spoIVB 1116462..1117742 (+) 1281 WP_060964791.1 SpoIVB peptidase -
  NNG64_RS05935 (NNG64_05925) spo0A 1118022..1118822 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  NNG64_RS05940 (NNG64_05930) alr 1118965..1120146 (-) 1182 WP_060964792.1 alanine racemase -
  NNG64_RS05945 (NNG64_05935) - 1120332..1120544 (-) 213 WP_060964793.1 spore germination protein -
  NNG64_RS05950 (NNG64_05940) - 1120669..1120881 (-) 213 WP_060965136.1 spore germination protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63998.82 Da        Isoelectric Point: 4.7614

>NTDB_id=710851 NNG64_RS05925 WP_060964790.1 1114568..1116298(+) (recN) [Bacillus siamensis strain WYJ-E14]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYQEGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLKNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKTRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=710851 NNG64_RS05925 WP_060964790.1 1114568..1116298(+) (recN) [Bacillus siamensis strain WYJ-E14]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTGGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGAGACATTAATGCCGGGGGAAAAAGCGTCTGCCG
TGTCAACGGTAAATTAGTAACGATTGCGGCTTTGAGGGAGATCGGCAGACTTTTATTAGATATTCACGGGCAGCATGACA
ACCAGCTGTTAATGGAAGATGACAAGCATTTAGAGCTTTTGGATAAATTTGCAGGTGCTGAGGCCGAATCAGCGCTTCAG
GCATACCAAGAAGGCTACGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCGGAAAGCGAACAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCAGCGAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AAGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGAAAAACGCCTATAATGCGCTCCGCAGCGAA
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCAGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAGGATGCAACCTTTCAAATGCGCAATCTGCTGGATGATCTGGAGT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATTAAACAGCTGAAGCGTAAATACGGAGCGACGGTC
GAAGACATTTTGGAATACGGCTCCAAAATAGAAGAGGAAATCGATCAAATCGAAAACCGCGACAGCCACCTTGAAGCGCT
GAAGAAGGAACTGGAGTCCGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAACCAGAAAAGCCTGGGCCA
AAAAACTGGCGGAAGCAATTCATCAGGAATTAAAAAGCCTGTATATGGGCAAATCAACGTTTGATACGGAATTCCTCGTG
AAAACCGATCCGTCTGCCAGTGAGGCGCCGGTTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGAATTGACCTTGT
GAAATTTTTAATTTCAACGAACACCGGTGAGCCGTTAAAACCGCTGTCAAAGGTCGCATCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGCTGAAGAGTATTTTTTCTTCTCAGCAGGATGTCACCTCCATCATCTTTGATGAAGTGGACACTGGCGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCTATGGCGGATACGCACCTTTTGATCGCAAAAGAATTCAAAGACGGACGGACGACAACGCATGTCA
CGCCGCTTTCCAAGCAGGATAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.715

100

0.887