Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NMH04_RS11950 Genome accession   NZ_CP101609
Coordinates   2321666..2322001 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 47     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2316666..2327001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMH04_RS11930 (NMH04_11875) gcvT 2317142..2318239 (-) 1098 WP_072367814.1 glycine cleavage system aminomethyltransferase GcvT -
  NMH04_RS11935 (NMH04_11880) - 2318801..2320471 (+) 1671 WP_061419576.1 DEAD/DEAH box helicase -
  NMH04_RS11940 (NMH04_11885) - 2320486..2321283 (+) 798 WP_017367588.1 YqhG family protein -
  NMH04_RS11945 (NMH04_11890) - 2321468..2321632 (+) 165 WP_082055572.1 anti-repressor SinI family protein -
  NMH04_RS11950 (NMH04_11895) sinR 2321666..2322001 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  NMH04_RS11955 (NMH04_11900) tasA 2322069..2322869 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  NMH04_RS11960 (NMH04_11905) sipW 2322928..2323500 (-) 573 WP_017357979.1 signal peptidase I SipW -
  NMH04_RS11965 (NMH04_11910) tapA 2323550..2324077 (-) 528 WP_061419578.1 amyloid fiber anchoring/assembly protein TapA -
  NMH04_RS11970 (NMH04_11915) - 2324330..2324656 (+) 327 WP_041506959.1 DUF3889 domain-containing protein -
  NMH04_RS11975 (NMH04_11920) - 2324691..2324885 (-) 195 WP_008342191.1 YqzE family protein -
  NMH04_RS11980 (NMH04_11925) comGG 2324946..2325329 (-) 384 WP_041506958.1 competence type IV pilus minor pilin ComGG -
  NMH04_RS11985 (NMH04_11930) comGF 2325326..2325823 (-) 498 WP_041506957.1 competence type IV pilus minor pilin ComGF -
  NMH04_RS11990 (NMH04_11935) comGE 2325765..2326079 (-) 315 WP_041506956.1 competence type IV pilus minor pilin ComGE -
  NMH04_RS11995 (NMH04_11940) comGD 2326063..2326509 (-) 447 WP_041506955.1 competence type IV pilus minor pilin ComGD -
  NMH04_RS12000 (NMH04_11945) comGC 2326502..2326795 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=710795 NMH04_RS11950 WP_017357978.1 2321666..2322001(+) (sinR) [Bacillus altitudinis strain 47]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=710795 NMH04_RS11950 WP_017357978.1 2321666..2322001(+) (sinR) [Bacillus altitudinis strain 47]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928