Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NMH04_RS08130 Genome accession   NZ_CP101609
Coordinates   1594842..1595744 (+) Length   300 a.a.
NCBI ID   WP_041507310.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 47     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1589842..1600744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMH04_RS08110 (NMH04_08085) - 1590511..1592244 (+) 1734 WP_255817007.1 glycosyltransferase -
  NMH04_RS08115 (NMH04_08090) - 1592241..1592516 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  NMH04_RS08120 (NMH04_08095) sucC 1592693..1593853 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  NMH04_RS08125 (NMH04_08100) sucD 1593876..1594778 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NMH04_RS08130 (NMH04_08105) dprA 1594842..1595744 (+) 903 WP_041507310.1 DNA-processing protein DprA Machinery gene
  NMH04_RS08135 (NMH04_08110) topA 1595939..1598014 (+) 2076 WP_008344821.1 type I DNA topoisomerase -
  NMH04_RS08140 (NMH04_08115) trmFO 1598085..1599389 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NMH04_RS08145 (NMH04_08120) xerC 1599452..1600369 (+) 918 WP_135008909.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34058.42 Da        Isoelectric Point: 8.5979

>NTDB_id=710788 NMH04_RS08130 WP_041507310.1 1594842..1595744(+) (dprA) [Bacillus altitudinis strain 47]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEENWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=710788 NMH04_RS08130 WP_041507310.1 1594842..1595744(+) (dprA) [Bacillus altitudinis strain 47]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTACGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAAATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTATCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38